Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq319 116 7e-21
>seq319
Length=32890058
Score = 116 bits (128), Expect = 7e-21
Identities = 107/133 (80%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| ||||| ||||||||| | ||| | ||||| ||||| |||||||||| ||||||||
Sbjct 17690330 GCTTTTTTCGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGA 17690271
Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
|||| |||||||| |||| || |||||| || || ||||||||||| ||| | || ||
Sbjct 17690270 TTGGCAGCTTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 17690212
Query 52176 AATGCAGTTGGTA 52188
| |||| ||||||
Sbjct 17690211 ATTGCAATTGGTA 17690199
Score = 104 bits (114), Expect = 4e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 17689698 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 17689639
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||||
Sbjct 17689638 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 17689579
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||| | | | ||||| |||
Sbjct 17689578 TAACTTCTACTATCGGACATATAAG 17689554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923138003903800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |