Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 >seq7 Length=12337560 Score = 131 bits (144), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 20/206 (10%) Strand=Plus/Plus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-cc 139561 |||| || ||| ||||| |||||| ||||||| | | ||||| |||| | | || || Sbjct 4508381 GTGTCGGGGCGGCGCCGGCCGCGCACCCCACGTCTCGGGGGGCGGCGGCTGCTCAGCGCC 4508440 Query 139562 cgggggcgccgctcccgtgttgctctgctgggggcgcggggccgc-----------gcgc 139610 | | |||||||| ||||| ||| ||||||| || | | ||| || |||| Sbjct 4508441 CAGCGGCGCCGCGCCCGTTTTGTTCTGCTGKGGTCCCCCGGCTGCCCAGGGTGGGCGCGC 4508500 Query 139611 CG-----CATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAAT 139665 || | ||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 4508501 CGGCCCTCTGCTCCCGGCCGCCGCCGAGGCTGACAGAGCCGAACTCTTCGCGGCGGCAGC 4508560 Query 139666 GGCG-GGTGCCGGCCGACCGCGGCCT 139690 |||| | ||| |||||||||||||| Sbjct 4508561 GGCGCTGAGCCCGCCGACCGCGGCCT 4508586 Score = 131 bits (144), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 20/206 (10%) Strand=Plus/Minus Query 1930 AGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCT 1988 |||||||||||||| ||| | |||| ||||||||||||||||||| |||||||||||| Sbjct 4508586 AGGCCGCGGTCGGCGGGCTCAGCGCCGCTGCCGCCGCGAAGAGTTCGGCTCTGTCAGCCT 4508527 Query 1989 CGGCGGCGCCCGGGAGATG-----CGgcgc-----------gcggccccgcgcccccagc 2032 |||||||| ||||||| | |||||| || ||| | | || |||| Sbjct 4508526 CGGCGGCGGCCGGGAGCAGAGGGCCGGCGCGCCCACCCTGGGCAGCCGGGGGACCMCAGC 4508467 Query 2033 agagcaacacgggagcggcgcccccggg-gc--aacccccgcgccccccTGCGCCGTGGG 2089 ||| ||| ||||| |||||||| | ||| || | | |||| ||||| | | |||||| Sbjct 4508466 AGAACAAAACGGGCGCGGCGCCGCTGGGCGCTGAGCAGCCGCCGCCCCCCGAGACGTGGG 4508407 Query 2090 GCGCGCGGACGGCGTCGCTCCCACAC 2115 | |||||| ||||| ||| || |||| Sbjct 4508406 GTGCGCGGCCGGCGCCGCCCCGACAC 4508381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569032557430800