Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq290 116 2e-21 seq408 102 5e-17 >seq290 Length=3199669 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||||||||| | || ||| ||||| |||||||| || ||| Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| |||||||||||| || || |||| |||||||||| ||| Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | | | || | || | | || || Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644374 Score = 114 bits (126), Expect = 8e-21 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||| | |||||||||||| | || ||| ||||| ||||||||||||||||| || Sbjct 2645274 CAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 2645215 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | || |||| |||||| ||||| || || |||| ||||||||| ||| | || || Sbjct 2645214 ACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCT- 2645156 Query 34291 CTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 |||||| ||||| ||| | || | || | || | | |||||| |||| || Sbjct 2645155 CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACT-GGTTCGACTTCCAGGGT 2645097 Query 34351 GATGG-TTTTGCCGGTGAGAGTTTTCACAAAG-ATCTGCAT 34389 ||||| ||||||| || || || ||||||||| |||||||| Sbjct 2645096 GATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGT--AGTCGGACAGCTGACGGTCG 34234 |||||||||||| | || ||| ||||| ||||||| |||| ||||| || | Sbjct 2645724 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCA 2645665 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || |||| ||||||||| || || || |||| |||||||||| ||| | || ||||||| Sbjct 2645664 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 2645605 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | | | || | || | | | || |||| ||||| Sbjct 2645604 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGAT- 2645546 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || || ||||||||||||||||| Sbjct 2645545 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 34177 CAGCACCAGG-TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGT 34235 |||||||||| || | ||| |||||||| ||||||||||| || || || ||| Sbjct 2644815 CAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGT 2644756 Query 34236 CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGT 34295 | |||| ||||||||| ||||| || | || ||||||||| ||| | || |||||||| Sbjct 2644755 CTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGT 2644696 Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 | ||| || ||||| | || | || | || | | || || |||| ||||| Sbjct 2644695 CCTGGATC-TTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT- 2644638 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATC-TGCAT 34389 || || || || || || |||||||||||| ||||| Sbjct 2644637 GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGT-ACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGT 34235 |||||||||||| | ||| ||| ||||||| ||||||||||| || || || | | Sbjct 2645495 CAGCACCAGGTGCAGAGTGACT--CTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCAT 2645438 Query 34236 -CGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCT 34292 | |||| ||||||||| ||||| || |||| |||| |||| || ||| | || |||| Sbjct 2645437 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCT-TCCT 2645380 Query 34293 TGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 |||| ||||| ||||| | || | || | || | | || || | | ||| Sbjct 2645379 TGTCCTGGATCTTG-GCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTG 2645321 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || || ||||||||||||||||| Sbjct 2645320 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 >seq408 Length=880842 Score = 102 bits (112), Expect = 5e-17 Identities = 167/231 (72%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAG-CACCAGGTGTAAAGTACTTTCTTTCTGTA-TGTTGTAGTCGG 34220 || || ||||| | ||| ||||||||| | ||| | | ||||| | |||||||||| | Sbjct 117875 CCACCCCGCAGGCGCAGGCACCAGGTGCA--GTAGT--CCTTCTGGAATGTTGTAGTCAG 117930 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 |||| |||| | || |||| ||||||||||||||| || |||| || |||||| | | Sbjct 117931 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCT-CTGGTC-AGGA 117988 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || |||||||| ||||| ||| | || | || | || | | |||| Sbjct 117989 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGA 118048 Query 34341 CGTCCACCGTGATGGT-TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | | || |||||||| |||||| || || || || ||||||||||||||| Sbjct 118049 CCT-CAAGGTGATGGTCTTTGCCAGTCAGGGTCTTGACAAAGATCTGCATC 118098 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/216 (73%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||| || || | ||| ||||||||| ||||||||||| ||||| |||| | || Sbjct 118113 CAGCACAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 118171 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGC-CGCTGCTGGTC-GACGGGCACGCTCTCCTTG 34294 |||| |||||||||| || || ||| | ||||||||| | || | || ||||||| Sbjct 118172 TTCCAG-TGCTTGCCTG--AAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCTCCTTG 118228 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| |||| | || | || | || | | | |||| |||| |||||| Sbjct 118229 TCTTGGATCTTG-GCTTGACATTCTCAATGGTGTCACTGGCT-CGAC-TCCAAGGTGATG 118285 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || || || ||||||||||||||| Sbjct 118286 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATC 118321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 34169 CGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC-GGACAGCTG 34227 ||||| | |||||||||||| | ||| ||| ||||| ||||||||||| | | || Sbjct 118328 CGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGT 118387 Query 34228 ACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCT 34287 |||| | || ||| | ||||| ||||| || || |||| ||||||||| || | || Sbjct 118388 ACGGCCATCTTCC-AGTGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 118445 Query 34288 CTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCA 34346 |||||||| ||| || ||||| | || | || | || | | ||||| || | Sbjct 118446 TTCCTTGTCTTGGATC-TTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAA 118504 Query 34347 CCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| ||||| || || || || || || |||||||| Sbjct 118505 GGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCAT 118547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323051938743200