Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq168 223 4e-53 >seq168 Length=11037988 Score = 223 bits (246), Expect = 4e-53 Identities = 308/435 (71%), Gaps = 1/435 (0%) Strand=Plus/Minus Query 125079 GCCGCTCATGCCCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCC 125138 ||||||| ||| ||||| || ||| ||||||||||||||| || || ||||||||| Sbjct 5457414 GCCGCTCCCGCCGCCCCGTCCCC-GCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCC 5457356 Query 125139 CTGCTCTTCGGCCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACA 125198 |||| ||||||||||| |||||||| ||||||| || || ||||| || || Sbjct 5457355 GCGCTCCTCGGCCAGGTAGGCGGCCAGGCGAGCGGCCAGGCAGCGCGGCCCGTCGCTGCA 5457296 Query 125199 GCCGTTTTCGTACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCG 125258 ||| ||| |||||| | ||||||| |||| ||| || | | |||||| || Sbjct 5457295 GCCCCGCTCGGCCAGCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCG 5457236 Query 125259 ACCCCAGTTGAAGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAA 125318 ||||| |||| ||||| ||| | || | | | |||| || |||| || Sbjct 5457235 GCCCCARTTGAGGCCGCCGTCGGCCTCCATCTGCGCCGCCACCCTGGCCAGCAGCGCGGC 5457176 Query 125319 CGCTGCCTGCGTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCG 125378 ||| || ||| || | | ||| | ||||||||||||||| |||||||||| ||| | Sbjct 5457175 CGCCTCCCGCGGCTCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTG 5457116 Query 125379 CCGCTCCAGCTCGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCC 125438 ||||||||||||||||||||| ||||| || || || ||| || | Sbjct 5457115 CCGCTCCAGCTCGGCCGCCGCCCGCCGCAGCGTGCCCGCCGTGGGGCTGCAGGGCAGCGC 5457056 Query 125439 TTCCTTGCCGCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAG 125498 | ||||| || |||||||||||||||||||||||||| |||||| || |||||||| Sbjct 5457055 GGCGCTGCCGGCGCGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAG 5456996 Query 125499 GGAGTCAGCCATGGC 125513 ||| | |||||| Sbjct 5456995 CGAGCGCGGCATGGC 5456981 Score = 205 bits (226), Expect = 9e-48 Identities = 304/435 (70%), Gaps = 1/435 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | ||| |||||||| || |||||| |||||||||||||||||||||||||| Sbjct 5456981 GCCATGCCGCGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 5457040 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || ||||| | | || ||| || || ||||||| ||||||||| || Sbjct 5457041 CGCGCCGGCAGCGCCGCGCTGCCCTGCAGCCCCACGGCGGGCACGCTGCGGCGGGCGGCG 5457100 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||||| ||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 5457101 GCCGAGCTGGAGCGGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 5457160 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| || |||| || |||| | | | || | ||| || Sbjct 5457161 GAGCCGCGGGAGGCGGCCGCGCTGCTGGCCAGGGTGGCGGCGCAGATGGAGGCCGACGGC 5457220 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||| ||||| || |||||| | | || ||| |||| ||||||| | ||| Sbjct 5457221 GGCCTCAAYTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCGCG 5457280 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| ||||| || ||||| || || ||||||| |||||||| ||| Sbjct 5457281 CTGGCCGAGCGGGGCTGCAGCGACGGGCCGCGCTGCCTGGCCGCTCGCCTGGCCGCCTAC 5457340 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| ||||||||| || || ||||||||||||||| ||| || |||| Sbjct 5457341 CTGGCCGAGGAGCGCGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGC-GGGGACGG 5457399 Query 157503 GCGGGCATGAGCGGC 157517 | ||| ||||||| Sbjct 5457400 GGCGGCGGGAGCGGC 5457414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509151571344000