Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq251 91.5 1e-13 >seq251 Length=33842814 Score = 91.5 bits (100), Expect = 1e-13 Identities = 238/355 (67%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 108206 TGCCTATTTTGTGGCCT-CTCGAGCCTTTGTCCAACATGTCTTAGACAACC-CTAAATCC 108263 |||||||||||| | | |||| ||||| || |||| |||| ||| | |||| | Sbjct 18107023 TGCCTATTTTGTAGTTAGCAGGAGC-TTTGTAGAATATGTACTAGAGAACAGCAAAATAC 18106965 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 ||| | |||| |||| ||||| || || ||||| || || |||| ||||| || Sbjct 18106964 TTAAGT-TCATTGAGTGGGCAAAAGATACTTACAGCCCAGATGAGTACCTGTGGGCAACA 18106906 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTC 108382 ||||| | ||| || | | || ||| | || || | |||||| | | || Sbjct 18106905 ATTCAGAGAA-TCCCTGAAGTCCCAGGCGCGTTTTCTTCCAGTGACAAGTACGATGTTTC 18106847 Query 108383 AGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT 108442 ||||||| |||| | |||||| | ||||||||||||||| || || ||||| || Sbjct 18106846 TGACATGAATGCCCTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAA 18106787 Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGC 108502 || || || || |||| ||| |||| | || | | |||| ||| || | Sbjct 18106786 AGGTGCACCCTACCCACCGTGCAGTGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGMGT 18106727 Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||| || ||||||| || | |||||| ||| | || || || ||||||||| Sbjct 18106726 AGGAGACTTGAACTGGATGCTACGGAACCACCACTTATTTGCTAATAAGTTTGAC 18106672 Score = 89.7 bits (98), Expect = 4e-13 Identities = 228/344 (66%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 18107544 CCTCTCAGTAACGAAGAAGCAGAATTTCCAATTGCTTACTCTATAGTGGTTTATCACAAA 18107485 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||| || ||||| | ||||| | Sbjct 18107484 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCTCCACAGAATTTTTACTGCATT 18107425 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 18107424 CATGTAGACAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTGAAGGGGATAGTCTCATGT 18107365 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 18107364 TTTGAWAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 18107305 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCA--TGGAAG 107984 ||||| || ||| | ||||| ||| |||| ||||| || | || | | ||||| Sbjct 18107304 GTGCAGGCAGACATTAACTGCATGAAAGAT---CTCCACAGAAGAAGTTCAAACTGGAAA 18107248 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||| || | || ||| || | ||||| || ||||||||||| Sbjct 18107247 TACCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAA 18107204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348247174140030