Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq290 143 2e-29 >seq290 Length=3199669 Score = 143 bits (158), Expect = 2e-29 Identities = 184/251 (73%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||| |||||| ||| |||||||| |||||||| || Sbjct 2644601 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 2644542 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || || || |||| || ||| |||||||| || Sbjct 2644541 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGG 2644482 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||| |||||| || || ||| || | | | | |||| | |||||| Sbjct 2644481 AAAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 2644422 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG-CCT-CAA 45346 ||| | ||| || |||||||| ||||| |||||||||||||| ||||||||| ||| ||| Sbjct 2644421 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGACCTGCAA 2644362 Query 45347 TACACACAGAT 45357 ||| |||||| Sbjct 2644361 GACATACAGAT 2644351 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||| ||||| ||||||||||| || ||| |||| ||||| || Sbjct 2644805 GTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTG 2644746 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| ||||||| ||| ||||| || || | |||||||||||| || || Sbjct 2644745 CTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 2644686 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | | |||| | ||||||||||| ||| || ||||| || || Sbjct 2644685 GGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTACCAGT 2644627 Query 45313 CAGAGTCTTCACAAAGAT-TTGCATG 45337 ||| |||||||||||||| ||||||| Sbjct 2644626 CAGGGTCTTCACAAAGATCTTGCATG 2644601 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGT--AGTCGTTCAGTTGGCGATCGTCGT 45185 |||| |||||| ||| |||||||| ||||||| |||| ||| |||| | || | Sbjct 2645720 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCATCCT 2645661 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 |||| || || || || || |||| || ||| |||||||| || | |||||||||||| Sbjct 2645660 CCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCT 2645601 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | | |||| | | |||||||| || || |||| Sbjct 2645600 GGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGAT-GTCT 2645542 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| ||||| |||||||||||||| |||||| Sbjct 2645541 TGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645510 Score = 105 bits (116), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 45132 AGTGCA-GCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGT 45190 |||||| | ||| |||||||| ||||| ||||| ||| ||| |||| ||||| Sbjct 2645034 AGTGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGC 2644976 Query 45191 TGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATT 45250 || || || || || |||| || ||| ||||| ||||| | || ||||||||| || Sbjct 2644975 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATC 2644916 Query 45251 TTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCC 45310 || ||| || | | | | |||| | ||||||||||| || || |||||||| Sbjct 2644915 TTGGCCTTCACATTCTCGAGG-TGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCA 2644857 Query 45311 GTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| |||||||||||||| |||||| Sbjct 2644856 GTCAGGGTCTTCACAAAGATCTGCATG 2644830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45111 CACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA 45170 ||||||||| | | |||| |||||| ||| |||||||| |||||||||||| || Sbjct 2645281 CACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACA 2645222 Query 45171 GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCA 45230 | |||| | || ||||| || || || || || |||| || ||| ||||| || || | Sbjct 2645221 GGGTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAA 2645162 Query 45231 CACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCT 45290 |||| ||||||| || || ||| || | | | | ||| | | || || | Sbjct 2645161 TGCCCT-CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGT-CACTGGTTCGACTT 2645104 Query 45291 CCACGGTAATCG-TCTTGCCCGTCAGAGTCTTCACAAAG-ATTTGCATG 45337 ||| ||| || | | ||||| ||||| |||||||||||| || |||||| Sbjct 2645103 CCAGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCATG 2645055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395050667681995