Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq113 107 2e-18 seq319 105 6e-18 >seq113 Length=61408302 Score = 107 bits (118), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || || || || ||||| ||||||| || | || | Sbjct 43800318 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 43800259 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||||||||| ||||| || || || |||||||| || || || ||||||||||| | Sbjct 43800258 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCRACTGCAGCAAAGG 43800199 Query 14346 C 14346 | Sbjct 43800198 C 43800198 >seq319 Length=32890058 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||||| || ||||| || ||||| || | ||| ||||| ||||||| ||| | Sbjct 31275674 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 31275615 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | |||||| |||| || || || || |||||||| ||||| || || || ||||| | Sbjct 31275614 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 31275555 Query 14346 CTATTAATCGTTCTCC 14361 | | | |||||||| Sbjct 31275554 CCACAACACGTTCTCC 31275539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482314880614600