Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq290 86.0 6e-12 >seq1 Length=1900206 Score = 132 bits (146), Expect = 4e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| ||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct 1361563 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 1361622 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| || ||||||||||||||||| || | Sbjct 1361623 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 1361682 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||| ||||||||||| || Sbjct 1361683 TGCCAGTCTCGGTCTGGGACTCGATGATGGC 1361713 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||| || ||||| || ||||| ||||| ||||||| || | ||| | Sbjct 1362820 TTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTC 1362879 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| ||||| |||| || || || | |||| |||| Sbjct 1362880 GCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCC 1362939 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | |||||| || || ||||||| Sbjct 1362940 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1362975 >seq290 Length=3199669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 2644371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 2644430 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || |||||| || ||| | || |||||| Sbjct 2644431 AGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGAC 2644490 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || ||||| ||| |||| ||| || || ||||| Sbjct 2644491 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTAC 2644550 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || ||||| || | ||||| || || Sbjct 2644551 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 2644600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 31192 CATGCAA-ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || || || ||||| ||||| || || || |||||| | || || || || Sbjct 2644601 CATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGAGCCCA 2644659 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | |||||| | || ||||||||| ||| | || || |||| Sbjct 2644660 GTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACC 2644719 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | | || ||||||||||| ||| |||||||| || | || || | Sbjct 2644720 AGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACA 2644779 Query 31371 ACATTCAAAAAGAATCGACTCTTCA-TCTGGTACTTAGACTGAGGGGCGG 31419 |||| || ||||| || ||||| || ||||| || | || ||||| || Sbjct 2644780 ACATCCAGAAAGAGTCAACTCTGCACCCTGGTGCTGCGCCTCAGGGGTGG 2644829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445738010252400