Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq290 96.9 3e-15 >seq290 Length=3199669 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || || || || || ||||| ||||| Sbjct 2644601 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 2644542 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || ||||| || || ||| ||||||| | ||||| ||||| || Sbjct 2644541 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGG 2644482 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 | ||| |||||||| ||| || || | | || | ||||| |||||||||| Sbjct 2644481 AAAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 2644422 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| |||| || || || || || ||||| Sbjct 2644421 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644374 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || || || |||| | |||||| ||||| || ||| Sbjct 2645025 GTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644967 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || ||||| || ||||| ||||| ||| || || Sbjct 2644966 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTC 2644907 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | || | |||||||| |||| || Sbjct 2644906 ACATTCTCGAG-GTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 2644848 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 2644847 TTCACAAAGATCTGCAT 2644831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496032406924000