Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq319 161 2e-34 seq408 140 7e-28 seq290 138 3e-27 seq113 116 9e-21 >seq319 Length=32890058 Score = 161 bits (178), Expect = 2e-34 Identities = 131/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 78492 TATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTAC 78551 |||||||||||||| ||||||||||||| || || | ||||| | ||||||||||| Sbjct 17692688 TATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATCCTGA 17692629 Query 78552 GAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTT 78611 | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| || | Sbjct 17692628 GGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTCACCT 17692569 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || | ||||| |||||||| ||| | ||||| ||||||| Sbjct 17692568 TGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 17692530 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || || ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 31275539 GGAGAACGTGTTGTGGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 31275598 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 31275599 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 31275658 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 31275659 ATCAGTAGAGATGA 31275672 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| || || || | ||||| | ||||| || || | Sbjct 31273919 TCTAGGTGGAGCGGTTCAGTCAAGAAGTGCAAATCACGGAAGCTCGCTGTTTCTATGGCT 31273978 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 31273979 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTCCTCATTGACACCTACA 31274038 Query 269016 T 269016 | Sbjct 31274039 T 31274039 >seq408 Length=880842 Score = 140 bits (154), Expect = 7e-28 Identities = 153/201 (76%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGAT-AGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 |||||||| ||||| || || |||||||| || || | || ||||| ||| || || Sbjct 118352 GTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCCATCTTCCAGTGCTT--CC 118409 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||||| || |||||||| || |||||||| || ||||| || || || ||||| ||||| Sbjct 118410 TGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTT 118469 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 118470 GACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 118529 Query 104542 TTTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 118530 CTTGACGAAMATCTGCATTTT 118550 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || |||||||| || || | || ||||| || || || || Sbjct 118128 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAG-TGCTTGCCT 118186 Query 104423 GCAAAAATTAGC-CTCTGTTGATCAGGAGG-TATTCCTTCTTTATCCTGAATCTTTGCTT 104480 | || || ||| ||||| || |||||||| || || || || || || ||||| || | Sbjct 118187 G--AAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCTCCTTGTCTTGGATCTTGGC-T 118243 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 | ||||| || | ||| || || || || | ||| | || || ||||| ||||| || | Sbjct 118244 TGACATTCTCAATGGTGTCACT-GGCTCGA-CTCCAAGGTGATGGTCTTGCCAGTCAGGG 118301 Query 104541 TTTTTACAAATATCTGCAT 104559 | || ||||| |||||||| Sbjct 118302 TCTTGACAAAGATCTGCAT 118320 >seq290 Length=3199669 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| || || | |||||||| || || || ||| Sbjct 2644798 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644739 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || ||||| || || || || || ||||| ||||| ||||| Sbjct 2644738 GCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTG 2644679 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||||||||| || || Sbjct 2644678 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTC 2644620 Query 104543 TTTACAAATATC-TGCAT 104559 || ||||| ||| ||||| Sbjct 2644619 TTCACAAAGATCTTGCAT 2644602 >seq113 Length=61408302 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 43800195 GTTGCCTTTGCTGCAGTYGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 43800254 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 43800255 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 43800314 Query 269258 GA 269259 || Sbjct 43800315 GA 43800316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151323237072260