Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3599 91.5 8e-14 seq563 82.4 4e-11 seq264 82.4 4e-11 >seq3599 Length=1371849 Score = 91.5 bits (100), Expect = 8e-14 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||| |||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 868881 AAAAACAAAATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 868822 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||| |||| Sbjct 868821 TCTAACCAACTGAGCTAACCGGCC 868798 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 875529 AAAAAAAAATGTCGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 875470 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| |||||||||||||| ||||| Sbjct 875469 CACGCTCTAACCAACTGAGCTAACCGGCCG 875440 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 870120 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 870061 Query 11528 CC 11529 || Sbjct 870060 CC 870059 >seq563 Length=4592950 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3141316 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3141375 Query 11528 CC 11529 || Sbjct 3141376 CC 3141377 >seq264 Length=16569758 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 8300117 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 8300058 Query 11528 CC 11529 || Sbjct 8300057 CC 8300056 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261474962622220