Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq454 176 6e-39 seq78 123 4e-23 >seq454 Length=20063581 Score = 176 bits (194), Expect = 6e-39 Identities = 217/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| || || |||||| | |||| || ||| | | || Sbjct 19788243 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 19788302 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || |||||||||||||| |||||||| | |||| Sbjct 19788303 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 19788362 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| || || ||||| | ||| | ||| Sbjct 19788363 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCAATCTCCACCATGG 19788422 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 19788423 TCTCCCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 19788482 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| ||||| || || || || || || || || |||||||||| Sbjct 19788483 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 19788539 Score = 109 bits (120), Expect = 8e-19 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | ||||| || | ||||| || || || ||||| ||| || || || Sbjct 19790158 TCACCGATGAGAATGAGCCGGGCAGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 19790217 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || || || ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 19790218 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 19790277 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || |||||||| || || |||| || || || | | |||| | |||||| Sbjct 19790278 ATGAGCCCCGGCACCAGCCCGAACACCTCCTGCCCCACRGAGAAGCGCAGGTGCTCGGGC 19790337 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| || || | ||| | |||| || |||| || || ||||||||| Sbjct 19790338 ACGTGGGGTGGGTACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGAGGGTACATTTCA 19790397 Query 9850 CCGTCAATAATCTG 9863 || || || ||||| Sbjct 19790398 CCATCGATCATCTG 19790411 >seq78 Length=4401391 Score = 123 bits (136), Expect = 4e-23 Identities = 184/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | |||| ||| || |||||| || || || || | | ||| Sbjct 3359562 GGAACGCCACYTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCCG 3359503 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || | |||| || || || |||||||||||||| | |||| Sbjct 3359502 TCTTCACGATCTCAAAGCCAGTGGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 3359443 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 3359442 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 3359383 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| | || || |||| || || || | ||| ||||||| Sbjct 3359382 TTTCCCCAAAAATGCCATTGGGTTGYGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 3359323 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 3359322 GAGCATCAATGTCTCCATACAG 3359301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708479675826800