Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq290 129 5e-25 seq408 91.5 1e-13 >seq290 Length=3199669 Score = 129 bits (142), Expect = 5e-25 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 || || || || || ||||||| |||| ||||| ||||| || |||||||| || | Sbjct 2644613 AAGATCTTGCATGCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGAT 2644554 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| || ||| ||||||||||| || || ||||||| | || || Sbjct 2644553 GTTGTAATCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTG 2644494 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || |||| || |||||||| | || || ||||| ||| | | ||||| Sbjct 2644493 CTGGTCGGGGGGAAAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC 2644434 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || |||| |||||||| || ||||| || || ||||||||||||||||| Sbjct 2644433 ACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644374 Query 95008 G 95008 | Sbjct 2644373 G 2644373 Score = 118 bits (130), Expect = 1e-21 Identities = 166/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 94784 CCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATA 94843 ||||||| |||| ||||| ||||| || |||||||| || | ||| || ||| || Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 94844 GTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATA 94903 ||| ||| |||||||| || || ||||||| | || ||||| ||||| ||||| Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963 || |||| ||| | || || ||||| || | | |||||| | | ||||| || Sbjct 2645159 CCCTCTT-GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTG-GTTCGACTTCC 2645102 Query 94964 ATCGTGATGGTTTTT-CCAGTAAGAGTTTTCACAAAG-ATCTGCATGC 95009 | |||||||||||| ||||| || || ||||||||| |||||||||| Sbjct 2645101 AGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCATGC 2645054 Score = 100 bits (110), Expect = 3e-16 Identities = 117/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || |||||||| ||||| ||| Sbjct 2644984 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTG 2644925 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| |||||| | | || || || | |||||| Sbjct 2644924 TCCTGGATCTTGGCCTTCACATTCTCGAG-GTGTCACTGGGCTCCACCTCCAGAGTGATG 2644866 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || ||||||||||||||||||| Sbjct 2644865 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 2644829 Score = 100 bits (110), Expect = 3e-16 Identities = 157/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||| ||||| ||||| || |||||||| || | ||| | | | | || || || Sbjct 2645726 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGAC 2645667 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||||||| || || ||||||| | || ||||| || || ||||| || || | Sbjct 2645666 CATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCT 2645607 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC-GACGTCAATCGTG 94969 |||| | || || ||||| ||| ||| |||||| | | || || || | ||| Sbjct 2645606 TGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCA-CTGGCTCACACCTCCAGAGTG 2645548 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||| || || ||||||||||||||||||| Sbjct 2645547 AT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 2645509 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG-- 94850 |||| ||||| ||||| ||| || || || || | ||| || || | || || | Sbjct 2645497 CGCAGCACCAGGTGCAGAGT-GACTCTTTCTGGATGTTGTAGTCAG--AGAGGGTGCGCC 2645441 Query 94851 -AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA-GGAATACCTTC 94908 | ||||||||||| || || | ||||| | || ||| | || ||| || || ||||| Sbjct 2645440 CATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCGG-TCAGGAAGGGATCCCTTC 2645382 Query 94909 TTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGT 94968 ||||| | || || || ||||| ||| |||||| | | || || | | || Sbjct 2645381 CTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGT 2645322 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| || ||||| || || ||||||||||||||||||| Sbjct 2645321 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 2645281 >seq408 Length=880842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA 94851 |||| ||||| ||||| ||||||||||| || | ||| || || | | || | Sbjct 118334 CGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCC 118393 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || |||| ||||||| | || ||||| || ||||| || ||||| || Sbjct 118394 ATCTTCCAG-TG-CTTCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTT 118451 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || ||||| | | |||||| | | ||||| |||| ||||| Sbjct 118452 GTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 118511 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || || || || |||||||| Sbjct 118512 GGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCAT 118547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262649454200