Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq724 123 4e-24 >seq724 Length=4338181 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 933476 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 933417 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 933416 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 933357 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 933356 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 933297 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 933296 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 933237 Query 16672 CCG 16674 || Sbjct 933236 TCG 933234 Score = 120 bits (132), Expect = 5e-23 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 924185 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 924244 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 924245 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 924304 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 924305 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCDGTCACCTACACGGA 924364 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || || || || Sbjct 924365 GCACGCCAAGAGGAAGACGGTTACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGG 924424 Query 16672 CCG 16674 || Sbjct 924425 TCG 924427 Score = 114 bits (126), Expect = 2e-21 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 963661 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 963602 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || | || |||||||| |||| || | |||| || |||| Sbjct 963601 CCGCCGCCTGGCTCGGCG-CGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 963543 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 963542 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 963483 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || | ||||| ||||| ||||||| | ||||| || Sbjct 963482 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGC 963438 Score = 104 bits (114), Expect = 4e-18 Identities = 190/273 (70%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 903019 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 902960 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| | ||||| Sbjct 902959 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACG-AGAGAC 902901 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || ||||||| ||| ||| |||| || || || ||| || || Sbjct 902900 GCGCGGCGTGCT-CAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 902842 Query 16612 GCACGCTAAACG-TAAG-ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||| ||| | ||| || ||||| ||||||| | ||||| || | || || || Sbjct 902841 GCACGCCAAAAGAGAAGAACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAG 902782 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || || | | || || || || ||||| || Sbjct 902781 GGTCGCACTCTCTACGGCTTCGGCGGTTAAACT 902749 Score = 100 bits (110), Expect = 4e-17 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 898904 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 898963 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || ||||||| |||| || | |||| || |||| Sbjct 898964 CG-CGCCTGGCTCGGCGCGGCGGGCTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 899022 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| ||| ||| ||| ||| |||| || || || ||| || ||| Sbjct 899023 CGCGGCGTGCTCAAGGTCTCCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAG 899082 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||| | ||||||| | ||||| || | || || || || Sbjct 899083 CACGCCAAGAGGAAGACGGTC-CGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGGT 899141 Query 16673 CG 16674 || Sbjct 899142 CG 899143 Score = 89.7 bits (98), Expect = 8e-14 Identities = 181/271 (67%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 875911 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 875852 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || | || || |||||||| |||| || | |||| || |||| Sbjct 875851 CCGCCG----------NGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 875802 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 875801 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 875742 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 875741 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 875682 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 875681 TCGCACCCTCTACGGCTTCGGCGGTTAAACT 875651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070541605835