Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq724 123 4e-24
>seq724
Length=4338181
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 933476 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 933417
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 933416 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 933357
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 933356 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 933297
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 933296 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 933237
Query 16672 CCG 16674
||
Sbjct 933236 TCG 933234
Score = 120 bits (132), Expect = 5e-23
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 924185 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 924244
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 924245 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 924304
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 924305 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCDGTCACCTACACGGA 924364
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| || || ||||||| | ||||| || | || || || ||
Sbjct 924365 GCACGCCAAGAGGAAGACGGTTACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGG 924424
Query 16672 CCG 16674
||
Sbjct 924425 TCG 924427
Score = 114 bits (126), Expect = 2e-21
Identities = 161/225 (72%), Gaps = 1/225 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 963661 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 963602
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || | || |||||||| |||| || | |||| || ||||
Sbjct 963601 CCGCCGCCTGGCTCGGCG-CGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 963543
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 963542 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 963483
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
|||||| || | ||||| ||||| ||||||| | ||||| ||
Sbjct 963482 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGC 963438
Score = 104 bits (114), Expect = 4e-18
Identities = 190/273 (70%), Gaps = 4/273 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 903019 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 902960
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| | |||||
Sbjct 902959 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACG-AGAGAC 902901
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | || ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 902900 GCGCGGCGTGCT-CAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 902842
Query 16612 GCACGCTAAACG-TAAG-ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669
|||||| ||| | ||| || ||||| ||||||| | ||||| || | || || ||
Sbjct 902841 GCACGCCAAAAGAGAAGAACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAG 902782
Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| || | | || || || || ||||| ||
Sbjct 902781 GGTCGCACTCTCTACGGCTTCGGCGGTTAAACT 902749
Score = 100 bits (110), Expect = 4e-17
Identities = 169/242 (70%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| || || || |||||||| || ||||||||||| || |||
Sbjct 898904 GCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATC 898963
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||||||| || || || ||||||| |||| || | |||| || ||||
Sbjct 898964 CG-CGCCTGGCTCGGCGCGGCGGGCTCAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 899022
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | ||| ||| ||| ||| ||| |||| || || || ||| || |||
Sbjct 899023 CGCGGCGTGCTCAAGGTCTCCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAG 899082
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || | ||||| ||| | ||||||| | ||||| || | || || || ||
Sbjct 899083 CACGCCAAGAGGAAGACGGTC-CGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGGT 899141
Query 16673 CG 16674
||
Sbjct 899142 CG 899143
Score = 89.7 bits (98), Expect = 8e-14
Identities = 181/271 (67%), Gaps = 10/271 (4%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 875911 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 875852
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || | || || |||||||| |||| || | |||| || ||||
Sbjct 875851 CCGCCG----------NGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 875802
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 875801 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 875742
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 875741 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 875682
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| | | || || || || ||||| ||
Sbjct 875681 TCGCACCCTCTACGGCTTCGGCGGTTAAACT 875651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79070541605835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |