Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq290 116 3e-21 seq1 113 4e-20 >seq290 Length=3199669 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | ||| || ||||| || ||||||||||| Sbjct 2644601 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 2644542 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| |||||| |||||||||||||| |||| | | ||||||||| || || Sbjct 2644541 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGG 2644482 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 | || |||||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 2644481 AAAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCAC 2644422 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 2644421 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2644373 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || || |||||||| || | ||||||| ||| || ||||||||||| Sbjct 2644798 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644739 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || | ||||||||| || || || || || ||||| ||| || ||| Sbjct 2644738 GCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTG 2644679 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || || ||| ||| | || | ||| | || ||||| || || || Sbjct 2644678 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGA-TGTCTTACCAGTCAGGGTC 2644620 Query 131218 TTTACGAAAATC-TGCATG 131235 || || || ||| |||||| Sbjct 2644619 TTCACAAAGATCTTGCATG 2644601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| || ||||| || ||||| || || || ||||||| ||| || ||||||||||| Sbjct 2645026 GGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 2644968 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | | ||||||||| ||||| || ||||| ||||| ||| || ||| Sbjct 2644967 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTT 2644908 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || || ||| ||| | || | || | ||| || || || || || Sbjct 2644907 CACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGT 2644849 Query 131217 TTTTACGAAAATCTGCATG 131235 || || || ||||||||| Sbjct 2644848 CTTCACAAAGATCTGCATG 2644830 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||||| | || | || ||||| || || |||||||| || Sbjct 2645510 GCCACCCCTGAGGCGCAGCACCAGGTGCAGAGT-GACTCTTTCTGGATGTTGTAGTCAGA 2645452 Query 131067 CATGGTGCGCG-AGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG-A 131124 | ||||||| | ||||| ||||||||||| ||| |||| | | |||| |||| || | Sbjct 2645451 GAGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAA 2645393 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 ||||| ||||| ||||| ||| || |||| | ||| | || || ||| ||| Sbjct 2645392 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCA 2645333 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | ||| || | ||| || || || || || || || || ||||||||| Sbjct 2645332 ACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645282 >seq1 Length=1900206 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||||||| ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 1361581 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 1361640 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| | |||||||||||||||||| || ||||||||| ||| | Sbjct 1361641 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGG 1361700 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 1361701 ACTCGATGAT 1361710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471982738684800