Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq290 118 9e-22 >seq290 Length=3199669 Score = 118 bits (130), Expect = 9e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||| ||||| || |||||||| || | | Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || ||||| ||| | || |||| ||| ||||| || Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || || |||||| | | | ||||| | ||||||| Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCCA 2644423 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || || ||||| || || ||||| |||||||| ||| Sbjct 2644422 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2644370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 16712 CCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATG 16771 |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||||| || | Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 16772 GTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG 16831 || | || |||| || || || ||| | || |||| ||| ||||| || | | Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 16832 CCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTT 16889 ||||| ||||| || || || |||||| | | | ||||| | || || || Sbjct 2645159 CCCTC-TTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTC-ACTGGTTCGACTT 2645104 Query 16890 CCACGGTGATGGTTTTT-CCGGTCAGCGTTTTGACAAA-AATCTGCAT 16935 ||| ||||||||||||| || ||||| || || ||||| ||||||||| Sbjct 2645103 CCAGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405062845934050