Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3858 127 1e-24
seq238 105 4e-18
seq1548 100 2e-16
seq290 95.1 8e-15
>seq3858
Length=18945
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 18673 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 18614
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 18613 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 18579
>seq238
Length=419873
Score = 105 bits (116), Expect = 4e-18
Identities = 76/88 (86%), Gaps = 5/88 (6%)
Strand=Plus/Plus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963
|||| ||||||||||||||||| |||||||| ||||| || ||||||||| ||||
Sbjct 52797 TTCCGTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCA 52856
Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||||||||
Sbjct 52857 TTCATGTGCGTCACTAATTAGATGACGA 52884
>seq1548
Length=45218
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||| ||| |||||||| ||||| | ||||| ||
Sbjct 25856 AAGCCCCTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTTGGAATCTTGT 25797
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| | ||||||| ||||||||||||||||||
Sbjct 25796 TCATCCATCCATGCGCATCACTAATTAGATGACGA 25762
Score = 96.9 bits (106), Expect = 2e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCAC-GGTACTTGTTCGCTATCGGTCTCG 20005
||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||
Sbjct 19105 CTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTACAGGTACTTGTTGGCTATCGGTCTCG 19046
Query 20006 CGGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 19045 TGCCGGTATTTAGCCTTA 19028
>seq290
Length=3199669
Score = 95.1 bits (104), Expect = 8e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||||| |||| ||||| || || ||| ||||| || || ||||||||||||
Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || |||| || | || || || ||||| || || | || || |||| |||
Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| ||||||||| || || |||||| |||| | || || | || ||
Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || |||| ||| ||||| || |||||||||||
Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334926401348945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |