Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3858 127 1e-24 seq238 105 4e-18 seq1548 100 2e-16 seq290 95.1 8e-15 >seq3858 Length=18945 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 18673 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 18614 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 18613 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 18579 >seq238 Length=419873 Score = 105 bits (116), Expect = 4e-18 Identities = 76/88 (86%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 |||| ||||||||||||||||| |||||||| ||||| || ||||||||| |||| Sbjct 52797 TTCCGTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCA 52856 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||| Sbjct 52857 TTCATGTGCGTCACTAATTAGATGACGA 52884 >seq1548 Length=45218 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| | ||||| || Sbjct 25856 AAGCCCCTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTTGGAATCTTGT 25797 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| | ||||||| |||||||||||||||||| Sbjct 25796 TCATCCATCCATGCGCATCACTAATTAGATGACGA 25762 Score = 96.9 bits (106), Expect = 2e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCAC-GGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||| Sbjct 19105 CTCTCTCTTCAAAATTCTTTTCAACTTTCCCTTACAGGTACTTGTTGGCTATCGGTCTCG 19046 Query 20006 CGGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 19045 TGCCGGTATTTAGCCTTA 19028 >seq290 Length=3199669 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| |||| ||||| || || ||| ||||| || || |||||||||||| Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || ||||| || || | || || |||| ||| Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||||||| || || |||||| |||| | || || | || || Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||| ||| ||||| || ||||||||||| Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334926401348945