Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq290 96.9 3e-15 >seq290 Length=3199669 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || |||||| | | Sbjct 2644831 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 2644890 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| ||||||||||| |||||||| Sbjct 2644891 GACACC-TCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 2644949 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||| | ||||| || || || || Sbjct 2644950 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA-AAC 2645008 Query 25179 ATTCAAAAAGAATCCACGCT 25198 || || || |||||||| || Sbjct 2645009 ATCCAGAAGGAATCCACCCT 2645028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433301092362425