Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq290 98.7 8e-16 >seq290 Length=3199669 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || ||||| || || | || || || || |||| ||||| ||||| Sbjct 2644368 GTCAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAG 2644427 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || ||||| ||||| |||| ||| Sbjct 2644428 CCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCC 2644487 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | ||||| |||||| | || ||| Sbjct 2644488 GACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGAT 2644547 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || ||||||||| Sbjct 2644548 TACAACATCCAGAAGGAATCCACC 2644571 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 22219 ATGCAA-ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || ||||| || |||| || || ||||| ||| Sbjct 2644602 ATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGACA-TCACCCTGGAGGTGGAGCCCAG 2644660 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||||| || || || ||||||||||| ||||| || || || Sbjct 2644661 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 2644720 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || ||||| ||| | || || |||||| |||| || ||||| Sbjct 2644721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 2644780 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| || || Sbjct 2644781 CATCCAGAAAGAGTCAAC 2644798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || ||| | ||| Sbjct 2645511 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACA-TCACTCTGGAGGTGTGAGCCAGT 2645569 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| ||||| || Sbjct 2645570 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 2645629 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA--TTACA 22396 || | || || ||||| ||||| ||| | |||||| |||||| | || || | ||| Sbjct 2645630 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAACA 2645689 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || || ||||||||| Sbjct 2645690 ACATCCAGAAGGAATCCACC 2645709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419701936858675