Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq290 161 2e-34 seq408 149 1e-30 seq26 93.3 8e-14 seq319 84.2 4e-11 >seq290 Length=3199669 Score = 161 bits (178), Expect = 2e-34 Identities = 171/220 (78%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || ||||| || || |||||||| || ||||| || || | Sbjct 2645273 AGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 2645214 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||||||| || || || || || || ||||| || |||||||| || Sbjct 2645213 CCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTC- 2645155 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||| || ||| |||||||| ||| ||| ||||||| |||| Sbjct 2645154 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA-CTGGTTCGACTTCCAGGGTG 2645096 Query 68424 ATGGTTTTT-CCCGTGAGGGTCTTGACGAA-TATCTGCAT 68461 ||||||||| || || |||||||| || || |||||||| Sbjct 2645095 ATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 Score = 147 bits (162), Expect = 4e-30 Identities = 167/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCT 68302 ||||||| |||| | || || || |||||||| |||||||| || || ||||| || | Sbjct 2644820 AGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 2644761 Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362 ||| ||||| | |||||| || ||||| || | || || ||||| || |||||||| || Sbjct 2644760 CCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTC 2644701 Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422 |||||| || ||||| || ||||| |||||||||||| | || || |||| ||| Sbjct 2644700 CTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 2644641 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATC-TGCAT 68461 ||| || || || || |||||||| || || ||| ||||| Sbjct 2644640 GAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 141 bits (156), Expect = 2e-28 Identities = 167/221 (76%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA--TCGGAGAGTGTCC 68301 ||||||| |||| ||| || ||||| || || |||||||| | | || || || || | Sbjct 2645729 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGC 2645670 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 ||||| || | |||||| || || || || || || || |||||||| |||||||| | Sbjct 2645669 GACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCT 2645610 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC-TACTTCCAAG 68420 ||||||| || ||||| ||||| ||| |||||||||||| ||| || || |||| Sbjct 2645609 CCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-ACTGGCTCACACCTCCAGA 2645551 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || |||||||| || || |||||||| Sbjct 2645550 GTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Score = 134 bits (148), Expect = 3e-26 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||| ||||||| |||||||| || || ||||| || | | Sbjct 2645500 AGGCGCAGCACCAGGTGCAGAGTG-ACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 2645442 Query 68304 CCAT-CTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT-GGAATGCCTT 68361 |||| | || | |||||| || ||||| || || || || |||| || || || |||| Sbjct 2645441 CCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTT 2645383 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 ||||||| || ||||| || ||||| |||||||||||| | || ||| | | | Sbjct 2645382 CCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAG 2645323 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || || || |||||||| || || |||||||| Sbjct 2645322 TGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 Score = 129 bits (142), Expect = 1e-24 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || ||||| || || |||||||| || || || || || | ||| ||||| | |||||| Sbjct 2645028 AGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTG 2644970 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || || || ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 2644969 CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCC 2644910 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||| |||||| | || || |||| |||||||| || || || ||| Sbjct 2644909 TTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGG 2644851 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| Sbjct 2644850 GTCTTCACAAAGATCTGCAT 2644831 >seq408 Length=880842 Score = 149 bits (164), Expect = 1e-30 Identities = 169/223 (76%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA-GAGTGT 68299 || ||||||| |||| ||| || || || || || |||||||| || || || ||| || Sbjct 118328 CGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGT 118387 Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 | |||||||| | ||||||| | | || || || || || ||||| || || ||||| Sbjct 118388 ACGGCCATCTTCCAG-TGCTTCCTG-CAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 118445 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 |||||||||||| ||||| || ||||| ||| |||||||| | || || || | Sbjct 118446 TTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 118505 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||||| || || || |||||||||||||| ||||||||| Sbjct 118506 GGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATT 118548 Score = 140 bits (154), Expect = 6e-28 Identities = 169/220 (77%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| || ||||| || ||||| ||||| |||||||| || || || || || | Sbjct 118108 AGGCGCAGCAC-AAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 118166 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGT-CTTTGTTGGTCGGGTGGA-ATGCCTT 68361 |||||||| | ||||| || | || || || || || ||||| || ||| ||||| | Sbjct 118167 CCATCTTCCAG-TGCTTGCCTG--AAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCT 118223 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||||||||| ||||| || ||||| ||| |||||||| ||| || ||| |||||| Sbjct 118224 CCTTGTCTTGGATCTTGGC-TTGACATTCTCAATGGTGTCA-CTGGCTCGACT-CCAAGG 118280 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| || || || ||||||||||| || |||||||| Sbjct 118281 TGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 Score = 123 bits (136), Expect = 5e-23 Identities = 172/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAAT-ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 || || || || ||||||| |||| ||| || | | | ||| | | ||||| || || Sbjct 117872 TTACCACCCCGCAGGCGCAGGCACCAGGTGCAG--TAGTC-CTTCTGGAATGTTGTAGTC 117928 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 || || || | |||||||| | |||||| || ||||| || || || | | |||| || Sbjct 117929 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTCT-GGTCAGG 117987 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 ||| ||||||||||||| || ||||| |||||||| ||| |||||||| | || Sbjct 117988 AGGA-TGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 118046 Query 68411 TACTTCCAAGGTGATGGT-TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||| || || ||||||||||| || |||||||| Sbjct 118047 GACCT-CAAGGTGATGGTCTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118097 >seq26 Length=874857 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| || || ||| |||||||||||| | || || || Sbjct 551908 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 551967 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||||||||| || ||||| |||||||| Sbjct 551968 AGGGTGATGGTTTTGCCCGTGAGGGTTTTCACGAAGATCTGCAT 552011 >seq319 Length=32890058 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 31273200 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 31273141 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 31273140 TACTGGATGGGGAA 31273127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921563704173400