Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq290 161 2e-34
seq408 149 1e-30
seq26 93.3 8e-14
seq319 84.2 4e-11
>seq290
Length=3199669
Score = 161 bits (178), Expect = 2e-34
Identities = 171/220 (78%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| |||| |||| ||| || ||||| || || |||||||| || ||||| || || |
Sbjct 2645273 AGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 2645214
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | ||||||||| || || || || || || ||||| || |||||||| ||
Sbjct 2645213 CCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTC- 2645155
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || ||||| ||||| || ||| |||||||| ||| ||| ||||||| ||||
Sbjct 2645154 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA-CTGGTTCGACTTCCAGGGTG 2645096
Query 68424 ATGGTTTTT-CCCGTGAGGGTCTTGACGAA-TATCTGCAT 68461
||||||||| || || |||||||| || || ||||||||
Sbjct 2645095 ATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056
Score = 147 bits (162), Expect = 4e-30
Identities = 167/220 (76%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCT 68302
||||||| |||| | || || || |||||||| |||||||| || || ||||| || |
Sbjct 2644820 AGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCG 2644761
Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362
||| ||||| | |||||| || ||||| || | || || ||||| || |||||||| ||
Sbjct 2644760 CCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTC 2644701
Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422
|||||| || ||||| || ||||| |||||||||||| | || || |||| |||
Sbjct 2644700 CTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 2644641
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATC-TGCAT 68461
||| || || || || |||||||| || || ||| |||||
Sbjct 2644640 GAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602
Score = 141 bits (156), Expect = 2e-28
Identities = 167/221 (76%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA--TCGGAGAGTGTCC 68301
||||||| |||| ||| || ||||| || || |||||||| | | || || || || |
Sbjct 2645729 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGC 2645670
Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361
||||| || | |||||| || || || || || || || |||||||| |||||||| |
Sbjct 2645669 GACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCT 2645610
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC-TACTTCCAAG 68420
||||||| || ||||| ||||| ||| |||||||||||| ||| || || ||||
Sbjct 2645609 CCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-ACTGGCTCACACCTCCAGA 2645551
Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || || |||||||| || || ||||||||
Sbjct 2645550 GTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511
Score = 134 bits (148), Expect = 3e-26
Identities = 165/220 (75%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| |||| ||| || ||| ||||||| |||||||| || || ||||| || | |
Sbjct 2645500 AGGCGCAGCACCAGGTGCAGAGTG-ACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 2645442
Query 68304 CCAT-CTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT-GGAATGCCTT 68361
|||| | || | |||||| || ||||| || || || || |||| || || || ||||
Sbjct 2645441 CCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTT 2645383
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421
||||||| || ||||| || ||||| |||||||||||| | || ||| | | |
Sbjct 2645382 CCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAG 2645323
Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| || || || |||||||| || || ||||||||
Sbjct 2645322 TGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283
Score = 129 bits (142), Expect = 1e-24
Identities = 150/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321
|| ||||| || || |||||||| || || || || || | ||| ||||| | ||||||
Sbjct 2645028 AGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTG 2644970
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || || || ||||| || ||||| ||||||||||| || ||||| |||
Sbjct 2644969 CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCC 2644910
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||||| |||||| | || || |||| |||||||| || || || |||
Sbjct 2644909 TTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGG 2644851
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| || || ||||||||
Sbjct 2644850 GTCTTCACAAAGATCTGCAT 2644831
>seq408
Length=880842
Score = 149 bits (164), Expect = 1e-30
Identities = 169/223 (76%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA-GAGTGT 68299
|| ||||||| |||| ||| || || || || || |||||||| || || || ||| ||
Sbjct 118328 CGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGT 118387
Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359
| |||||||| | ||||||| | | || || || || || ||||| || || |||||
Sbjct 118388 ACGGCCATCTTCCAG-TGCTTCCTG-CAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 118445
Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419
|||||||||||| ||||| || ||||| ||| |||||||| | || || || |
Sbjct 118446 TTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAG 118505
Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||||||| || || || |||||||||||||| |||||||||
Sbjct 118506 GGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATT 118548
Score = 140 bits (154), Expect = 6e-28
Identities = 169/220 (77%), Gaps = 9/220 (4%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||||||| || ||||| || ||||| ||||| |||||||| || || || || || |
Sbjct 118108 AGGCGCAGCAC-AAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 118166
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGT-CTTTGTTGGTCGGGTGGA-ATGCCTT 68361
|||||||| | ||||| || | || || || || || ||||| || ||| ||||| |
Sbjct 118167 CCATCTTCCAG-TGCTTGCCTG--AAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCT 118223
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421
|||||||||| ||||| || ||||| ||| |||||||| ||| || ||| ||||||
Sbjct 118224 CCTTGTCTTGGATCTTGGC-TTGACATTCTCAATGGTGTCA-CTGGCTCGACT-CCAAGG 118280
Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| || || || ||||||||||| || ||||||||
Sbjct 118281 TGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320
Score = 123 bits (136), Expect = 5e-23
Identities = 172/232 (74%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 68232 TTTCCTCCGCGAAGGCGCAAT-ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290
|| || || || ||||||| |||| ||| || | | | ||| | | ||||| || ||
Sbjct 117872 TTACCACCCCGCAGGCGCAGGCACCAGGTGCAG--TAGTC-CTTCTGGAATGTTGTAGTC 117928
Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350
|| || || | |||||||| | |||||| || ||||| || || || | | |||| ||
Sbjct 117929 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTCT-GGTCAGG 117987
Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410
||| ||||||||||||| || ||||| |||||||| ||| |||||||| | ||
Sbjct 117988 AGGA-TGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 118046
Query 68411 TACTTCCAAGGTGATGGT-TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||||||| ||| || || ||||||||||| || ||||||||
Sbjct 118047 GACCT-CAAGGTGATGGTCTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118097
>seq26
Length=874857
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
||||||||||| || ||||| || || ||| |||||||||||| | || || ||
Sbjct 551908 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 551967
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 551968 AGGGTGATGGTTTTGCCCGTGAGGGTTTTCACGAAGATCTGCAT 552011
>seq319
Length=32890058
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799
||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| ||
Sbjct 31273200 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 31273141
Query 10800 TACCGGATGGGGAA 10813
||| ||||||||||
Sbjct 31273140 TACTGGATGGGGAA 31273127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921563704173400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |