Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq290 109 1e-18 seq408 105 2e-17 >seq290 Length=3199669 Score = 109 bits (120), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGT-CTTCTAATTGTTTTCCTGCGAA 288341 ||||| ||||| || ||||| | ||| ||||| || | | || | || || || ||||| Sbjct 2645474 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAA 2645415 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| | | ||||| ||||| || |||||||| || ||||| || || Sbjct 2645414 GATCAGCCTCTGCGGTCAGGAAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 2645355 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || ||| |||| ||||| ||||| || ||||| ||||| || Sbjct 2645354 CTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 2645295 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 2645294 AAAGATCTGCAT 2645283 >seq408 Length=880842 Score = 105 bits (116), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGC-GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGA 288340 ||| || ||||| || ||||| | ||| || || || ||||| | | || ||||| | Sbjct 118357 TTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCCATCTTCCAGTGCTT--CCTGCAA 118414 Query 288341 AGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 ||||||| | ||| || | ||||| ||||| || || ||||| || ||||| || | Sbjct 118415 AGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACAT 118474 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | || || | || || || || ||||| ||||| || ||||| ||||||| Sbjct 118475 TCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 118534 Query 288461 CGAATATCTGCATT 288474 |||| ||||||||| Sbjct 118535 CGAAMATCTGCATT 118548 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/193 (71%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||| | | || || ||||| | || || || || ||||| | || || |||||||||| Sbjct 117910 CTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGA 117969 Query 288344 TCAG--ACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||| | || | |||| ||||| || |||||||| || || || || || Sbjct 117970 TCAGCCTCTCTGGTCAGGA----GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 118025 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC-TTCCCGGTCAGAGTCTTGA 288460 || || | || || | || || || || ||||| ||| || || ||||| ||||||| Sbjct 118026 CTCAATGGTGTCACTGGGCTCGACCTCAAG-GTGATGGTCTTTGCCAGTCAGGGTCTTGA 118084 Query 288461 CGAATATCTGCAT 288473 | || |||||||| Sbjct 118085 CAAAGATCTGCAT 118097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179577392529410