Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq290 127 2e-24 seq1671 91.5 2e-13 seq3599 89.7 6e-13 seq3094 89.7 6e-13 seq408 89.7 6e-13 seq399 86.0 7e-12 >seq290 Length=3199669 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | |||| ||||| |||| ||| ||||| || || |||||||||| | Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| |||| || |||||||| || || || || || | ||||||||||| || Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||| |||||| ||| || || | || | | ||||| || | ||||| Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| |||||||| ||||| || || Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAC 2644368 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA--TCAGCCAGAGTCCGCT 42051 |||| ||||| |||| ||| ||||| || || |||| | |||| ||| || || Sbjct 2645726 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGAC 2645667 Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 | || || |||||||| ||||| || || || | ||||||||||| || | || ||||| Sbjct 2645666 CATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCT 2645607 Query 42112 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||||| ||| || || | || | | ||||| || | | ||| || | |||| Sbjct 2645606 TGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGA 2645547 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| |||||||| ||||| Sbjct 2645546 T-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 >seq1671 Length=622465 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 585874 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 585933 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 585934 ATACTAACGAGGA 585946 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 585767 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 585708 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 585707 TACTAACGAGGA 585696 >seq3599 Length=1371849 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 870666 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 870725 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 870726 TACTAACGAGGA 870737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 875879 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 875820 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 875819 ATACTAACGAGGA 875807 >seq3094 Length=7953 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2608 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2667 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2668 TACTAACGAGGA 2679 >seq408 Length=880842 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 121353 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 121412 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 121413 TACTAACGAGGA 121424 >seq399 Length=34323315 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 846292 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 846351 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 846352 TACTAACGAGGA 846363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543178204134800