Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq290 127 2e-24 >seq290 Length=3199669 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||| | | ||||||| |||| Sbjct 2644585 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTCC 2644526 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||||||||| |||| || ||||| || Sbjct 2644525 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTCC 2644466 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || | |||| Sbjct 2644465 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 2644406 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || ||||| || Sbjct 2644405 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Score = 123 bits (136), Expect = 2e-23 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||| || || | | ||||||| ||||||| ||||||||||| Sbjct 2645025 GTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644967 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| |||||||| ||||| || || || || || ||| Sbjct 2644966 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTC 2644907 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | ||| | ||||||||| |||| || Sbjct 2644906 ACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 2644848 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 2644847 TTCACAAAGATCTGCAT 2644831 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | || ||||||| ||||||| ||||||||||| Sbjct 2644798 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644739 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||||||| || ||||| || || || || || | | || ||||| Sbjct 2644738 GCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGA-TCTTGGCTTT 2644680 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| || ||||| || | || | ||||| || |||| || Sbjct 2644679 GACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGA-TGTCTTACCAGTCAGGGT 2644621 Query 64426 TTTTACGAAAAT-TTGCAT 64443 || || || || |||||| Sbjct 2644620 CTTCACAAAGATCTTGCAT 2644602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT-C 64290 ||||| || || | || || ||||| || |||||||| || | || ||||||| | | | Sbjct 2645494 AGCACCAGGTGCAGAGT-GACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATTC 2645436 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTT 64349 || ||||||||||| || | || |||| |||| |||| || ||| || ||||| || | Sbjct 2645435 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTTCCTTGT 2645377 Query 64350 CTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 | || | | || ||||| ||| ||| | || |||| || || ||| | | ||| | | Sbjct 2645376 CCTGGA-TCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATG 2645318 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| |||| || || || || || ||||| Sbjct 2645317 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGAC--GGTGCGCGCGT 64289 ||||| || || | || ||||| || || ||||||| | | ||| |||||| | | Sbjct 2645723 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCAT 2645664 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 | || ||||||||||| ||| | || |||| |||||||||||| ||||| || || || | Sbjct 2645663 CCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGT 2645604 Query 64350 CTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 | || || || ||| || ||| | || |||| ||| ||| || | ||| | | Sbjct 2645603 CCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGA-TG 2645545 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| |||| || || || || || ||||| Sbjct 2645544 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612978871800