Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq290 91.5 1e-13 >seq1 Length=1900206 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||||| | |||| ||| ||||||| ||| |||||||||||||||||| |||| Sbjct 1361567 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 1361626 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| |||||||||||||||||| || || Sbjct 1361627 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 1361686 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || ||| | || ||||| |||| Sbjct 1361687 AGTCTCGGTCTGGGACTCGATGATG 1361711 >seq290 Length=3199669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | ||||| || || ||||| || ||| Sbjct 2644798 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644739 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| | |||||| || || || ||||||||||||||| ||| || ||| Sbjct 2644738 GCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTG 2644679 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || || || ||||| || Sbjct 2644678 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGA-TGTCTTACCAGTCAGGGTC 2644620 Query 127097 TTTACAAAAATC-TGCATG 127114 || ||||| ||| |||||| Sbjct 2644619 TTCACAAAGATCTTGCATG 2644601 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAA--TCGCCCATCGTGCGAG 126956 |||| ||||| || | || || || || || || |||| | || || |||||| Sbjct 2645726 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGAC 2645667 Query 126957 AATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCT 127016 ||| || ||||| || ||||| |||||| | |||||| ||||| || |||||||||| Sbjct 2645666 CATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCT 2645607 Query 127017 TGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC-CGTACTCTCGACTTCGACGGTC 127075 ||||| ||| || ||| | | |||| |||||| | ||| | || || | || Sbjct 2645606 TGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCAC-ACCTCCAGAGTG 2645548 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || ||||| ||||| || || ||||| ||||||||| Sbjct 2645547 A-TGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475470516542800