Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq454 181 2e-40 seq78 131 2e-25 >seq454 Length=20063581 Score = 181 bits (200), Expect = 2e-40 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| |||||||| ||| || ||||| ||| | || || | Sbjct 19788243 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 19788302 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 19788303 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 19788362 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| || || ||||| | ||| | ||| Sbjct 19788363 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCAATCTCCACCATGG 19788422 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 19788423 TCTCCCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 19788482 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 19788483 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 19788542 Score = 149 bits (164), Expect = 9e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || | ||||||||| |||| || ||||| | ||| ||||| || |||||||| Sbjct 19790182 GTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGCACGTCGCAGACG 19790241 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | |||||| || | |||||| || |||||||||||||| | |||||||| | || ||| Sbjct 19790242 CGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCCGGCACCAGCCCGAAC 19790301 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| | |||||||| | |||||||| | ||| | |||||||| | Sbjct 19790302 ACCTCCTGCCCCACRGAGAAGCGCAGGTGCTCGGGCACGTGGGGTGGGTACAGCATCTCT 19790361 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || || || || || || ||||||||||| || || | ||| Sbjct 19790362 GCCTGTGTGTCCCGCACCGTCGGAGGGTACATTTCACCATCGATCATCTG 19790411 Score = 120 bits (132), Expect = 4e-22 Identities = 171/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| || ||| |||| | | |||||| |||||||| | ||| Sbjct 19789011 GAAAGATTTGACCATATGGGATAGTCCATGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 19789070 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| || | || ||||||| ||| | ||||| Sbjct 19789071 CTGCTGGAAGGTGTACTCCTGGTCGTGGATCTGGAAGGTGTCAGGCAGCAGTGGGTGCCA 19789130 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || |||||||||||||| || ||| | Sbjct 19789131 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGGAACTTCTGGT--TG 19789188 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| |||||||||||| || || ||||| ||||| Sbjct 19789189 AACAGCAGCTCAGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACATA 19789247 >seq78 Length=4401391 Score = 131 bits (144), Expect = 2e-25 Identities = 207/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||| ||| || | ||| || | || ||| | Sbjct 3359562 GGAACGCCACYTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCCAGGGATGCCG 3359503 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | |||||||| || || || | | || || || || ||||||||||||||| | |||| Sbjct 3359502 TCTTCACGATCTCAAAGCCAGTGGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 3359443 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | |||| Sbjct 3359442 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 3359383 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| || ||| | ||||| || | | ||||| | ||| | || | Sbjct 3359382 TTTCCCCAAAAATGCCATTGGGTTGYGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 3359323 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| || Sbjct 3359322 GAGCATCAATGTCTCCATACAGRTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 3359264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723681907573000