Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq290 111 4e-19 >seq290 Length=3199669 Score = 111 bits (122), Expect = 4e-19 Identities = 150/205 (73%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| ||||||||| | || || | ||||| Sbjct 2645268 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 2645209 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| || ||| | || Sbjct 2645208 TTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTG-TC 2645150 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG- 199595 ||| ||||| |||||| || | |||||| || ||| || |||| ||||| | Sbjct 2645149 CTGGATCTTGGCCTTCACATTCTCAATGGTGTC-ACTGGTTCGACTTCCAGGGTGATGGT 2645091 Query 199596 TCTTACCCGTGAGAGTTTTCACAAA 199620 | || || || || || |||||||| Sbjct 2645090 TTTTGCCAGTCAGGGTCTTCACAAA 2645066 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGT--AGTCAGCCAAAGTCCTTCCA 199474 ||| || ||||| || || || ||||| |||| ||||| |||||| || || | ||| Sbjct 2645724 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCA 2645665 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || ||||||||||| || || ||||| || | ||||||||| || ||| || || Sbjct 2645664 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTG 2645605 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||||||| |||| |||||| | | | || |||| ||||| Sbjct 2645604 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGAT- 2645546 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| || || Sbjct 2645545 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 2645514 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || || ||||| |||| |||||| |||| || || | || || Sbjct 2644586 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTC 2644527 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || ||||| || | ||||||||| || || || ||| || Sbjct 2644526 CTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTC 2644467 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | || || || | ||||| || Sbjct 2644466 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 2644407 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 2644406 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 2644377 Score = 109 bits (120), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 || |||| ||||| ||||| || |||| ||||||||||| | || | || ||||||| Sbjct 2644809 CAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCA 2644750 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || |||||||| | | ||||||||| || ||| || || ||||| | Sbjct 2644749 GCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGA 2644690 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| || || |||| |||||| | | || || |||| ||||| ||||||| Sbjct 2644689 TCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTAC 2644631 Query 199602 CCGTGAGAGTTTTCACAAAAAT 199623 | || || || |||||||| || Sbjct 2644630 CAGTCAGGGTCTTCACAAAGAT 2644609 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 || || || ||||| |||| ||| ||||||| || || | || |||||||||||||| Sbjct 2645028 AGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTG 2644970 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || ||||| || | ||||||||| ||| ||| ||||| ||||| ||||| | Sbjct 2644969 CCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCC 2644910 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| |||| |||||| | | || || |||| ||||| ||||| || || || Sbjct 2644909 TTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGG 2644851 Query 199610 GTTTTCACAAAAATTTG 199626 || |||||||| || || Sbjct 2644850 GTCTTCACAAAGATCTG 2644834 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCAT- 199475 ||| || ||||| ||||| ||||| || |||| ||||||||||| | || | |||| Sbjct 2645495 CAGCACCAGGTGCAGAGT-GACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATT 2645437 Query 199476 CTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAA-AAATTCCTTCTCGC 199534 | ||||||||||| || |||||||| || | |||| |||| |||| || ||||| Sbjct 2645436 CCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTTCCTTG 2645378 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| || || |||| |||||| | | || || | | ||||| Sbjct 2645377 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATG 2645318 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| || || Sbjct 2645317 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 2645286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178844640366365