Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq290 145 9e-30 seq408 98.7 1e-15 >seq290 Length=3199669 Score = 145 bits (160), Expect = 9e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | |||| |||||| |||| || ||||| ||||| ||||| || | Sbjct 2644602 TGCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAG 2644543 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| |||| || ||||||||||| || || |||| | ||||||||||| | Sbjct 2644542 ACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGG 2644483 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| |||||| |||||| ||| | || | | ||||| || | |||| Sbjct 2644482 GAAAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 2644423 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| ||||| ||||| || || |||||||| ||||| ||| Sbjct 2644422 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2644370 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGA-TGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 |||| || || | |||| |||||| |||| || ||| || ||||| |||||||| Sbjct 2644831 TGCCACCCCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCA 2644772 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || |||||| |||| || ||||||||||| ||||| ||||| | ||||||||| | Sbjct 2644771 GAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGG 2644712 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || |||||||||| |||||| |||| || | | ||||| || | ||| Sbjct 2644711 GGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCC 2644652 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT-TTGCAT 46593 || |||| ||||| || || || ||||| || || |||||||| |||||| Sbjct 2644651 ACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 123 bits (136), Expect = 3e-23 Identities = 166/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 46370 CCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGA 46429 ||||| | ||||| |||||| |||| || ||||| ||||| ||||||||||| || Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 46430 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACG 46489 ||||| | || || |||||||| || || || |||| | ||||||||| | || | | Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 46490 CTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCC 46549 | || ||||||| |||||| ||| | || | | ||||| || | ||| || ||| Sbjct 2645159 CCCT-CTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACT-GGTTCGACTTCC 2645102 Query 46550 ACCGTGATGG-TTTTGCCCGTCAGCGTTTTAACAAAG-ATTTGCAT 46593 | ||||||| ||||||| ||||| || || |||||| || ||||| Sbjct 2645101 AGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT--AGTCG 46423 ||| || || | |||| |||||| |||| || ||||| ||||| |||| |||| Sbjct 2645739 GCCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCA 2645680 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || ||||| | || || ||||||||||| || || |||| | ||||||||||| Sbjct 2645679 GACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGG 2645620 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || |||||||||| |||||| ||| | || | | ||||| || | | | Sbjct 2645619 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCAC 2645560 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 2645559 ACCTCCAGAGTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Score = 116 bits (128), Expect = 4e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| || ||||| || || |||||| |||| || ||||||||||| || || Sbjct 2645019 TCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 2644961 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | | ||||||||| |||||| ||| | || Sbjct 2644960 ATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 2644901 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || | ||||| |||| |||||||| ||||| ||||| || || ||| Sbjct 2644900 TCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 2644842 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 2644841 AAGATCTGCAT 2644831 Score = 109 bits (120), Expect = 6e-19 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGT-ACTCTCCTTTTGGATATTGTAGTCG 46423 |||| || || | |||| |||||| |||| || ||||| || ||||| |||||||| Sbjct 2645511 TGCCACCCCTGAGGCGCAGCACCAGGTGCAGAGTGACTCT--TTCTGGATGTTGTAGTCA 2645454 Query 46424 GATAGAGTGCGCTCGT-CGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC-GG 46481 || || |||||| | | | || ||||||||||| ||||| |||| | |||| |||| || Sbjct 2645453 GAGAGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGG 2645395 Query 46482 CCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATT 46541 || | | ||||||||| |||||| |||| || | | ||||| || | | Sbjct 2645394 AAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCT 2645335 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 2645334 CAACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645283 >seq408 Length=880842 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/212 (73%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGA-TATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||||| |||| ||| || ||| |||| | |||||||| || || || || | || | Sbjct 117893 CACCAGGTGCA--GTAGTC--CTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTT 117948 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 46502 | ||||||||||| ||||| |||| | || |||||| | || | || ||||||||| Sbjct 117949 CCAGCTGCTTGCCTGCGAAGATCAGCCTCT-CTGGTCAGGAGG-ATGCCTTCCTTGTCCT 118006 Query 46503 TGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT-T 46561 |||||| ||||| || | | ||||| || | || || | || |||||||| | Sbjct 118007 GGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCT-CAAGGTGATGGTCT 118065 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || || |||||||| ||||| Sbjct 118066 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565202401379400