Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq290 154 1e-32 seq408 120 3e-22 seq319 95.1 1e-14 seq113 89.7 5e-13 >seq290 Length=3199669 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 2644371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 2644430 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||||||||| ||||| |||| Sbjct 2644431 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGA 2644489 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| |||| ||||||||| || || Sbjct 2644490 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTA 2644549 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| |||||| | || ||||| |||||||||| ||||||| ||| Sbjct 2644550 CAACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 2644601 Score = 127 bits (140), Expect = 2e-24 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 38244 ATGCAAATA-TTCGTAAAAACGCTCACGGGCAAAA-CCATCACCGTCGACGTCGAGGCCA 38301 ||||| || || || || || || || ||||||| |||||||| | || ||||| ||| Sbjct 2645056 ATGCAGATTCTTTGTGAAGACCCTGACTGGCAAAAACCATCACCCTGGAAGTCGAA-CCA 2645114 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | | | || | || |||| ||||| ||||| |||||| | |||| Sbjct 2645115 GTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAA-GAGGGCATTCCCCCAGACC 2645173 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || || || |||||||| || | |||||||| |||||||| Sbjct 2645174 AGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACA 2645233 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||||||| |||||| | || ||||| ||||||||||| ||||||| Sbjct 2645234 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGG 2645279 Score = 120 bits (132), Expect = 3e-22 Identities = 167/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 38244 ATGCAA-ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || || || || |||||| | || || ||| ||| Sbjct 2644602 ATGCAAGATCTTTGTGAAGACCCTGACTGGTAAGAC-ATCACCCTGGAGGTGGAGCCCAG 2644660 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | |||| || |||| ||||| ||||| |||||| | ||||| Sbjct 2644661 TGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCA 2644720 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| |||| |||||||||| |||||||| Sbjct 2644721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 2644780 Query 38423 CATCCAAAAGGAAGCGACGCTGCA-TTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||||||||| | || || ||| Sbjct 2644781 CATCCAGAAAGAGTCAACTCTGCACCCTGGTGCTGCGCCTCAGGGGTGGC 2644830 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| ||| || ||| ||| Sbjct 2645283 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGAGCCCAGT 2645342 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | |||| || |||| ||||| || || || || || |||| Sbjct 2645343 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACCG 2645402 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGAC-GAGCGCACCCTCAACGACTACA 38421 ||| |||| || | ||| ||||| |||||||| || | |||||||||| ||||||| Sbjct 2645403 -CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACA 2645461 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || | || || ||||| |||||||||| | || || ||| Sbjct 2645462 ACATCCAGAAAG-AGTCACTCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 2645510 >seq408 Length=880842 Score = 120 bits (132), Expect = 3e-22 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || || ||||| ||||||||| | || |||||| | Sbjct 118551 AAAAATGCAGATKTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 118492 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | |||| || |||| ||||| || || || || | || Sbjct 118491 CAGTGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGA 118432 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACT 38418 ||| ||| |||| || | || || || || ||||| || | || |||||| | |||| Sbjct 118431 CCAGCAGAGGCTGATCTTTGCAGG-AAGCA-CTGGAAGATGGCCGTACCCTCTTCTGACT 118374 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| |||||| | || ||||| |||||||||| Sbjct 118373 ACAACATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCG 118334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/218 (72%), Gaps = 11/218 (5%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 118320 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCTTGGA-GTCGAG-CCAGT 118263 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | || | | ||| || |||| ||||| ||||| || || || |||| Sbjct 118262 GACACCATTGAGAATG--TCAAGCCAAGATCCAAGACAAGGAGGGCATCTCCTCCTGACC 118205 Query 38362 AACAGCG-GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 | ||| | ||| || | | ||||| || ||||| || | || ||||| |||||| Sbjct 118204 AGCAGAGCGCTGATCTTCA--GGCAAGCA-CTGGAAGATGGCCGTACCCTGTCTGACTAC 118148 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| || ||| | || ||||| || |||||||| Sbjct 118147 AACATCCAGAAAGAATCCACTCTGCACTT-GTGCTGCG 118111 >seq319 Length=32890058 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 31273201 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 31273142 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || |||||||||||||| || |||| |||||||||| Sbjct 31273141 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 31273087 >seq113 Length=61408302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 43800318 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 43800259 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 43800258 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCRACTGCAGCAAAGG 43800199 Query 133037 CCACCA 133042 | |||| Sbjct 43800198 CAACCA 43800193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500140945244800