Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq264 266 4e-66 >seq264 Length=16569758 Score = 266 bits (294), Expect = 4e-66 Identities = 1020/1593 (64%), Gaps = 24/1593 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 11961569 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATGCGGTCAATGTCGTCCTTGCT 11961628 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | ||||||| | ||| || | Sbjct 11961629 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 11961688 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||||| || |||| |||||||| ||||| | || || | || | || || || Sbjct 11961689 GGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 11961748 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 11961749 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 11961808 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| || || || | | ||| || | | || || ||| Sbjct 11961809 TGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGCAC-GCTGCTCTGGTTGTCTGAGT 11961867 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | | Sbjct 11961868 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCAG 11961927 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || |||| || | || Sbjct 11961928 TCATCACTCCTCCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAGCA 11961987 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || || || | || ||| | | || || ||||| || | || |||| Sbjct 11961988 GATCCTGCACGTTCTCAGACTTGTCTCCCATGAGAATAGCTGCTTGTACGGCAGCACCGT 11962047 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||| ||||| || | || || || |||||||| || || ||||| Sbjct 11962048 AAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAATCCT 11962107 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 | || | || || || ||||| || || || ||||| |||| ||||| || | | Sbjct 11962108 GWAGCAGCTTCTGGATCTTGGGGATSCGGGTAGAGCCACCCACCAGCACGATCTCCTGGA 11962167 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | || || || || |||| || Sbjct 11962168 TCTGGCCCTTGTCGAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 11962227 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| ||||| || ||||| || ||||| |||| Sbjct 11962228 GGAAAAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTGATGGAAGTGTAGAAGTCAA 11962287 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 ||| || | | || ||||| |||||| | | |||| | || | || |||| Sbjct 11962288 TGCCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTGCGCT 11962347 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 |||| | |||||| ||||| || | || | | || ||| ||| || | ||| || Sbjct 11962348 TTGCCCTCTCACAAGCCGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCAATGTCAC 11962407 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 ||| || || || || || ||||| ||||| | | | || || || | Sbjct 11962408 GCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGTCCT 11962467 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | |||||||| || || || || || || | || || ||||| || || | || ||| Sbjct 11962468 CCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCATCCTCGATGG 11962527 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | | || ||||| || || || || ||||||||||| ||||| |||||| | || Sbjct 11962528 TAAGGATGGAGACATCYAAAGTGCCCCCTCCCAGGTCAAAGATGAGGACGTTCTTCTCCC 11962587 Query 7587 C------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | | | ||||| || || |||||||| ||||| || || || || || || | Sbjct 11962588 CAGCCCGGGTTCCTTTCTTGTCCAGGCCGTACGCAATAGCGGCTGCGGTGGGCTCGTTGA 11962647 Query 7641 TAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | ||||| | ||| || ||||| | || || | || || || || || || || || Sbjct 11962648 TGATACGCATCACA-TTGAGGCCTGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGCTGG 11962706 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 || || || ||||| ||||| || || | ||| || | | || || || ||||| Sbjct 11962707 GAGTCATTGAAGTARGCCGGCACTGTGATGACAGCATTCTGCACCTTGCACCCCAGATAG 11962766 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || || || ||||| ||||| || ||||| || ||||| || | || Sbjct 11962767 GCCTCAGCAATCTCCTTCATCTTGGTCAGCACCATGGAGCTGATCTCCTCTGGGAAGAAG 11962826 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATA 7879 |||| | || || || | || || | | | |||| || || | || | Sbjct 11962827 GTTTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTCATTC 11962880 Query 7880 ACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 ||| | | | ||| | ||||| || || ||| |||| | |||| | Sbjct 11962881 ACCACACGGAAAGGCCAGTGCTTCATGTCTGACTGCACCGTGGGGTCATCATACTTGCGG 11962940 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || || || |||||||| | ||||| |||||||||| ||| ||||| || Sbjct 11962941 CCAATGAGGCGTTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTTTTTG 11963000 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGT 8055 || || |||||||| || || || || || || ||||| || || | |||| || || Sbjct 11963001 GCAGCATCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTGTGGT 11963056 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || ||||| || ||||| || || || || || | ||| || ||||||| ||||| Sbjct 11963057 GCGGTTCCCCTGATCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACGCCCACGCA 11963116 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || || | || || ||||| || Sbjct 11963117 GGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 11963149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635092349979800