Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq290 127 5e-24 seq408 118 2e-21 >seq290 Length=3199669 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || |||||||| | || || Sbjct 2644595 TCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGT 2644536 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| || || |||||||| ||||| ||||| || | || ||||| || |||| ||| Sbjct 2644535 GCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCC 2644476 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || ||| ||||||||||||||||| ||| ||||| || Sbjct 2644475 CTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTC 2644419 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || |||| || || || || | ||||| Sbjct 2644418 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644374 Score = 122 bits (134), Expect = 2e-22 Identities = 166/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || ||||| || || || || ||||| |||| || || Sbjct 2645277 TCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 2645218 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || |||||||| |||||||| Sbjct 2645217 GCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 2645158 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT--TTCCACTTCA 195096 |||| ||| || || || ||| || |||||||||||||| ||| ||| ||||| Sbjct 2645157 CTCTT-GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGTTCGACTTCC 2645102 Query 195097 AGGGTAACCGTCTTT-CCTGTCAAAGTTTTTACGAACACT-TGCAT 195140 ||||| | || ||| || |||| || || || || | | ||||| Sbjct 2645101 AGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 >seq408 Length=880842 Score = 118 bits (130), Expect = 2e-21 Identities = 158/215 (73%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCA-AGAGTTCTCCCATCTTC 194990 || ||||| || || || || || || || ||||| || | | || || | |||||||| Sbjct 118340 ACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCCATCTTC 118399 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| ||||| ||||| || | || ||||| ||||| |||||||| |||||||| Sbjct 118400 CAG-TGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 118457 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||||| |||||||||||||| ||| || || |||||||| | || Sbjct 118458 GATCTTGGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGT 118514 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || |||| || || ||||| | ||||||| Sbjct 118515 CTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTT 118549 Score = 107 bits (118), Expect = 4e-18 Identities = 165/225 (73%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || ||||| || |||||||| ||||| || || ||||| || | || || Sbjct 118105 CTGAGGCGCAGCACAAG-TGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTA 118163 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT-TGTTGGTCTGGAGGA-ATGC 195037 | |||||||| || ||||| |||| ||||| || | || ||||| |||||| |||| Sbjct 118164 CGGCCATCTTCCAG-TGCTTGCCTG--AAGATCAGCGCTCTGCTGGTCAGGAGGAGATGC 118220 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT--TTCCACTTC 195095 | || |||||||| || || ||||||| |||||||||||||| ||| || ||| | Sbjct 118221 CCTCCTTGTCTTGGATCTTG-GCTTGACATTCTCAATGGTGTC---ACTGGCTCGACTCC 118276 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||| | ||||| || |||| || || || || | ||||| Sbjct 118277 AA-GGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||| | |||| ||||| || | || || | |||||||| |||||||| |||||||||| Sbjct 117910 CTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAAGA 117969 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || | | ||||| ||||| |||||||| ||||| || || || |||||| |||| Sbjct 117970 TCAG-CCTCTCTGGTCAGGAGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 118027 Query 195071 CAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT-CCTGTCAAAGTTTTT 195126 |||||||||| ||| || || |||| ||| | |||||| || |||| || || Sbjct 118028 CAATGGTGTC---ACTGGGCTCGACCTCAA-GGTGATGGTCTTTGCCAGTCAGGGTCTTG 118083 Query 195127 ACGAACACTTGCAT 195140 || || | ||||| Sbjct 118084 ACAAAGATCTGCAT 118097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109409173387865