Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq290 100 2e-16 >seq290 Length=3199669 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| ||| ||||| ||||| || || || Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || || | |||||||| | || Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| || ||| | || | |||| || ||| || Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 2645264 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCC 2645205 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | ||||||||| | || | ||||| ||||| Sbjct 2645204 AGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTC-TTGTCCTGG 2645146 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | |||| || || || || | ||| ||||||| Sbjct 2645145 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGT-TCGACTTCCAGGGTGATGGTTT 2645089 Query 34951 TTCCC-GTGAGAGTCTTCACAAAG-ATCTGCAT 34981 || || || || |||||||||||| |||||||| Sbjct 2645088 TTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCAT-CATCCAGCTGTTTTCCGGCAAA 34849 |||||||| ||||| ||||| || ||| | || ||| | |||||||| || || || || Sbjct 2645474 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAA 2645415 Query 34850 TATTAGTCGTTGCTGGTCTTGC-GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 || || | ||| |||| | || | ||| |||||||| ||||| |||||| Sbjct 2645414 GATCAGCCTCTGC-GGTCAGGAAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC-- 2645358 Query 34909 ATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 || || || | |||| || |||||| ||| || ||||| || || || || ||||| Sbjct 2645357 ATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTT 2645298 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 2645297 CACAAAGATCTGCAT 2645283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || |||||||| || || ||||| Sbjct 2645020 TTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 2644962 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | ||| |||||||| ||||| || || | Sbjct 2644961 GATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 2644904 Query 34910 TGCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | || | | |||| || ||| || || | || ||||| || || || || ||||||| Sbjct 2644903 TTCTCGAGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCA 2644844 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 2644843 CAAAGATCTGCAT 2644831 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || | || |||||||| || || || || Sbjct 2644792 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAG 2644733 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | ||||||||||| ||||| |||||| || Sbjct 2644732 ATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGAC--AT 2644675 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| || || || || || || ||||||| Sbjct 2644674 TCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCA 2644616 Query 34969 CAAAGATC-TGCAT 34981 |||||||| ||||| Sbjct 2644615 CAAAGATCTTGCAT 2644602 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTAT--AGTCCG 34812 || ||||| | | || |||| ||| | ||| ||| ||||| ||||| | |||| | Sbjct 2645738 CCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAG 2645679 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | || |||| |||||||| || || ||||| || || | |||||||| | | Sbjct 2645678 ACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2645619 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA- 34931 | | ||||||||||| ||||| || ||| | || | |||| || |||| Sbjct 2645618 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGG-CTCAC 2645560 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || || || || || |||||||||||||||||||| Sbjct 2645559 ACCTCCAGAGTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324613441775160