Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq319 114 1e-20
seq113 111 2e-19
>seq319
Length=32890058
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| |
Sbjct 31275674 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 31275615
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| |
Sbjct 31275614 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 31275555
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 31275554 CCACAACACGTTCTCC 31275539
>seq113
Length=61408302
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| || || || || ||||||||||| || || || |
Sbjct 43800318 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 43800259
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 43800258 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCRACTGCAGCAAAGG 43800199
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 43800198 CAACCACTCTCTCACC 43800183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562073000695800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |