Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-12 >seq3 Length=2727613 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| ||||| ||||| || ||||| || || || || || ||||||| Sbjct 2554015 ATGCTGTAGTGACTGTCCCAGCCTATTTCAAYGACTCCCAGCGCCAGGCCACCAAAGATG 2554074 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || || || || | || ||||| || || || || ||||| Sbjct 2554075 CTGGAACCATTGCAGGGCTCAACGTCCTGAGGATCATCAACGAGCCCACAGCAGCTGCCA 2554134 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 2554135 TTGCCTATGGGCTGGACAA 2554153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029026553421550