Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq408 91.5 1e-13 >seq408 Length=880842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATC-GGCGATAGTTCTGGCATCGTCCAATTG 101325 || ||||||||||| || || || ||||| || | || || | | |||| ||| | || Sbjct 118346 TGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACGGCCATCTTCC-AGTG 118404 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| |||||||| |||| | ||| || || || || |||||||| || ||||| || || Sbjct 118405 CTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTT 118463 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | |||||| | || || ||||| |||| || ||||| || Sbjct 118464 GGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGT 118523 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 118524 CAGGGTCTTGACGAAMATCTGCAT 118547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396253792968915