Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq290 89.7 4e-13 >seq290 Length=3199669 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| ||||| || || ||| || || || || ||||||||||| Sbjct 2644601 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGA 2644542 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 2644541 CAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGG 2644482 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCC 48716 || |||||| ||||| ||||| || || | | || | | | || | |||| Sbjct 2644481 AAAGCCCTCTTTGTCCTGGATCTTGGCCTTCAC-GTTCTCA-ATGGTGTCACTGGGCTCC 2644424 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | || || || || || |||| || || ||||| |||||||| Sbjct 2644423 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2644374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAA-TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||| ||||| || |||| ||||| || || || |||||| || || ||||| |||| Sbjct 2644830 GCCACCCCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAG 2644771 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || |||| |||| |||||| || || || |||| | ||| || || | || Sbjct 2644770 AGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGG 2644711 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||||||| ||||| ||| ||| | | | || | ||||| Sbjct 2644710 GAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCA 2644651 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC-TGCAT 48766 |||||| || || || || || |||| || || ||||| ||| ||||| Sbjct 2644650 CCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAA--TCA 48596 ||| ||||| || |||| ||||| || || ||| || || || || |||| | ||| Sbjct 2645739 GCCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCA 2645680 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 || || | ||| | || |||| |||||| || ||||| ||||| | ||| || || | | Sbjct 2645679 GACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGG 2645620 Query 48657 GGAACGCCCTCCTTGTC 48673 |||| |||||||||||| Sbjct 2645619 GGAATGCCCTCCTTGTC 2645603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380913945560685