Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq251 241 1e-58 >seq251 Length=33842814 Score = 241 bits (266), Expect = 1e-58 Identities = 659/1003 (66%), Gaps = 8/1003 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | ||||||||| || || |||| |||| || || || ||| || Sbjct 18106607 AGATACAGAGCTTTGTGTCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACA 18106666 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || || | ||||| |||| |||| ||||||| || |||| Sbjct 18106667 TCAGTGTCAAACTTATTAGCAAATAAGTGGTG---GTTCCGTAGCATCCAGTTCAAGTCT 18106723 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 18106724 CCTACKCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCACGGTGGGTAGGGTGCA 18106783 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 18106784 CCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGGGCATTCATG 18106843 Query 160272 TCGGAGGTGTCGTATTTGT-ACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTG 160330 || || ||||| |||| || | | ||| || || || || | || || | ||| Sbjct 18106844 TCAGAAACATCGTACTTGTCACTGGAAGAAAAC-GCGCCTGGGACTTCAGGGATTCTCTG 18106902 Query 160331 TAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTC 160390 | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 18106903 AATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACTT 18106962 Query 160391 TCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGC 160450 ||| |||| | || || | || || ||| | || ||||| || || Sbjct 18106963 AAGTATTTTGCTGTTCTCTAGTACATATTCTACAAAGCTCCTGCTAACTACAAAATAGGC 18107022 Query 160451 GCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGA 160510 ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 18107023 ACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTT 18107082 Query 160511 CACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCAT 160570 | || | | | | | || | ||||||||||| || || | ||||| Sbjct 18107083 TATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAACAGGCAT 18107142 Query 160571 GCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAG 160630 ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 18107143 TTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCTT 18107202 Query 160631 GTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCT 160690 ||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | || Sbjct 18107203 GTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAACT 18107262 Query 160691 CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 ||| || || ||||||| ||||| ||||||||||| | |||||| ||||| || Sbjct 18107263 TCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATA 18107322 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 || || |||||| | |||| | |||||| || || ||||| || || || ||| Sbjct 18107323 TACCACACTCTCTAACTGGCTGGAAATAAAGACATTWTCAAAACATGAGACTATCCCCTT 18107382 Query 160811 CACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| | ||| || || || | | |||| ||| || || | ||| || | |||| Sbjct 18107383 CACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTCT 18107441 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || || ||||| | || || | || || | |||||| || || |||| | ||| | Sbjct 18107442 GTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTA 18107501 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTC 160989 ||||||| || || ||||| || | || ||| ||| || | | | | ||| || | Sbjct 18107502 TAGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTACTGAGAGGTTCCATAATGTATTTCC 18107561 Query 160990 GCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||||| | || || |||| || |||||||| ||||| Sbjct 18107562 TAGTCTTGGTGAAGGAAGCACAGTCTGCAGTCATGTTAATATA 18107604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577182438352200