Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq604 87.8 2e-12 >seq604 Length=12125790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 |||| ||||| || | ||| || ||||| ||||||||| | ||||| | |||||||| | Sbjct 11712134 CACCGTAAGGCGATCTTGGGTAAAAAGGGGTGGTCTCTTTTTGTGGGATTTCTTGCACTT 11712193 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATA 48164 | ||| |||||||||||||||| ||||| || Sbjct 11712194 TTCCAAAAAGTTCACTGGTGGAGGCTTGGTA 11712224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665452016325400