Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq319 95.1 2e-14 seq176 89.7 9e-13 >seq319 Length=32890058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||||||| |||||| | ||| |||||||||||||| || || |||||||| |||||||| Sbjct 31275655 TTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTCAGCCAAAAAATTGATGC 31275596 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGC 39268 |||| | ||||||||| || || |||||| ||||| || Sbjct 31275595 AAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGC 31275554 >seq176 Length=1392574 Score = 89.7 bits (98), Expect = 9e-13 Identities = 200/287 (70%), Gaps = 29/287 (10%) Strand=Plus/Plus Query 132741 taatttatatatcaattttataatattatcaaataaatttttatattgata-tatatatt 132799 |||||||||||| | ||||| | | | | | | ||| | ||| | ||| ||||||| Sbjct 1374130 TAATTTATATATATTCTCTATAAAAATTTTATAAATATTATAATAGT-ATAGTATATATA 1374188 Query 132800 ctttattaaaaactataaaatCCTGACATTCGTCT-TCTAAT--GATATT-----TTATT 132851 ||||| | || |||| ||| | | || | ||| | ||| |||||| ||||| Sbjct 1374189 ATTTAT--ATAATTATATAATTATTAGATACATCTATATAAATAGATATTGTATATTATT 1374246 Query 132852 TATAT----TTTCTTCTATAGTATCTATAGTTATAAAATCTGATGGATTAAACataatta 132907 ||||| ||| ||||||| |||||||| ||||| | | | | |||| || |||| Sbjct 1374247 TATATTTTATTTATTCTATATTATCTATATTTATATATTATATTATATTATTTAT-ATTA 1374305 Query 132908 actatacatttattattatactatattaattcaaagaattttttgaat---taatatatt 132964 | |||| | ||| |||||| |||||||||| | | | | || || || |||||| Sbjct 1374306 ATTATATAATTA--ATTATA-TATATTAATTATTATATTATATTATATTTATATTATATT 1374362 Query 132965 tatattccaaatattatgt--aaatgtattaattatgaattatatta 133009 |||||| ||||||||| | | | |||||||||| ||||||||| Sbjct 1374363 TATATT--AAATATTATATTATATTATATTAATTAT--ATTATATTA 1374405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905078354151000