Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq724 179 5e-39 seq399 167 3e-35 seq1 125 9e-23 seq319 98.7 1e-14 seq38 95.1 1e-13 seq424 93.3 5e-13 >seq724 Length=4338181 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 871184 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 871243 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| ||||||| |||| | Sbjct 871244 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 871303 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 871304 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 871363 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 871364 GCACCTGCTTCAGCACCTTGTA 871385 Score = 176 bits (194), Expect = 6e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 909697 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 909638 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| ||||||| |||| | Sbjct 909637 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 909578 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 909577 TGTCGTTAACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 909518 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 909517 GCACCTGCTTCAGCACCTTGTA 909496 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 875321 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 875262 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || ||||||| ||||||| |||| | Sbjct 875261 TGGTGGAGCGCTTGTTGTAGTGRGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 875202 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||| | |||| ||||||||| |||||||| Sbjct 875201 TGTCGTTGACGAAAGAATTCATGATACTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 875142 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 875141 GCACCTGCTTCAGCACCTTGTA 875120 Score = 165 bits (182), Expect = 1e-34 Identities = 161/205 (79%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 885894 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 885953 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| ||||||| |||| | Sbjct 885954 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 886013 Query 1254463 TG--TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAG-ATGCCCACGTCGG 1254519 || |||||||| || |||||||||| ||| | |||| ||| |||||| ||||| Sbjct 886014 TGCTTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGAATGCCCGTGTCGG 886073 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||||||| ||||||||||| Sbjct 886074 GGTGCACCTGCTTCAGCACCTTGTA 886098 Score = 131 bits (144), Expect = 2e-24 Identities = 155/200 (78%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| |||||| ||| | | ||||| ||| ||||||||||| |||| | ||| | Sbjct 983542 TGGCCAGCTCGCCG-GCAGCAGC-GGCGC--GGCCGTCTGGATCTCCCGCGAGT-GAT-G 983489 Query 1254406 TGTTGCGCTTGTTCG-AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 || ||||||||| | |||||||||| || ||||||| ||||||| |||| ||| Sbjct 983488 TGGAGCGCTTGTTTGTAGTGCGCCAG-CGCGAGGCCTCGCCCGCGATGCGCTCGAAGATG 983430 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 |||||||| || |||||||||| ||| | |||| |||||||| |||||||||| Sbjct 983429 TCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACAAGATGCCCGTGTCGGGGTGC 983370 Query 1254525 ACCTGCTTGAGCACCTTGTA 1254544 |||||||| |||||||||| Sbjct 983369 ACCTGCTT-CGCACCTTGTA 983351 Score = 125 bits (138), Expect = 9e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||||||||| || ||||||| ||||||| |||| Sbjct 1020717 GATGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAA 1020776 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 ||||||||||| || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 1020777 GATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 1020836 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||||||||| Sbjct 1020837 GTGCACCTGCTTCAGCACCTTGTA 1020860 Score = 120 bits (132), Expect = 4e-21 Identities = 155/200 (78%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 1254345 CTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATC 1254404 || ||||| |||||| ||| | ||| ||||||||| |||||||||| |||| | ||| Sbjct 987992 CTTGCCAGCTCGCCGGGCAGCAGCAG-CGCACGGCG-TCTGGATCTCCCGCGAGT-GAT- 988047 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 ||| |||||| || |||||||||| || ||||||| || |||||| |||| ||| Sbjct 988048 GTGGAGCGCTT-TTGTAGTGCGCCAG-CGCGAGGCCTCGCCGC-GATGCGCTCGAAGATG 988104 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 |||||||| || |||||||||| | ||| | |||| ||||||| ||| | ||||| Sbjct 988105 TCGTTGACGAAGGAGTTCATGA-TGCCATGGCCTTG-GACAGATGCC--CGTTGCGGTGC 988160 Query 1254525 ACCTGCTTGAGCACCTTGTA 1254544 |||||||| |||| |||||| Sbjct 988161 ACCTGCTTCAGCA-CTTGTA 988179 Score = 113 bits (124), Expect = 6e-19 Identities = 158/210 (75%), Gaps = 10/210 (5%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG-TGCCG 1254401 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | | Sbjct 974903 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTTG 974844 Query 1254402 ATCG-TGTTGCGCTTGTTCGAGTGCGCCAG--ACGGCCGGCCTCGGTGCCGATGCG-GTC 1254457 || | || |||| |||| |||||||||| || ||||||| || |||| || Sbjct 974843 ATGGTTGGAGCGC-TGTTGTAGTGCGCCAGGCGCGAGGGGCCTCGCCGCGATTGCGCCTC 974785 Query 1254458 GATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTG-TTGGAGATGCCCACGT 1254516 || ||||||||||| || |||||||| | ||| | |||| ||||||||| || Sbjct 974784 GAAGATGTCGTTGACGAAGGAGTTCATTATGCCCAT-GGCTTGCGACGAGATGCCCGTGT 974726 Query 1254517 CGGGGTGCACCTGCTTGAG-CACC-TTGTA 1254544 |||||||||||||||| || |||| ||||| Sbjct 974725 CGGGGTGCACCTGCTTCAGCCACCATTGTA 974696 Score = 100 bits (110), Expect = 3e-15 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 1254412 GCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGA 1254471 ||||||| |||||||||| || |||||||| ||||||| |||| |||||||||| Sbjct 997395 GCTTGTTGTAGTGCGCCAGGCGCGCGGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGA 997336 Query 1254472 CA-AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1254530 | || |||| ||| ||| | |||| ||||||||| |||||||||||||||| Sbjct 997335 CGGAAGGAGTCATTGATTCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGC 997276 Query 1254531 TTGAGCACCTTG 1254542 || ||||||||| Sbjct 997275 TTCAGCACCTTG 997264 Score = 89.7 bits (98), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 1020612 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 1020671 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG 1254443 | ||| ||||||||| |||||||||| || |||| || Sbjct 1020672 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCNCG 1020712 >seq399 Length=34323315 Score = 167 bits (184), Expect = 3e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 29942043 GCTTGGCCAGCTCSCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 29941984 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | | ||||| || | | Sbjct 29941983 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCCCCGGCAATGCGCTCAAAGA 29941924 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 29941923 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGGT 29941864 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 29941863 GCACCTGCTTCAGCACCTTGTAGA 29941840 >seq1 Length=1900206 Score = 125 bits (138), Expect = 9e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 1361589 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1361648 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| |||||| |||| | | ||| | Sbjct 1361649 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 1361708 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 1361709 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 1361757 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || |||||||| || | |||||||||||||||| ||||| | |||| | |||| Sbjct 1356818 AACTCCCCCGAGAGGACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCG 1356877 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 |||||||||||||||| | || | ||||||||||||| | | | |||||| Sbjct 1356878 TTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAG 1356930 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||||| ||| ||||| || || |||||||||||||| || ||||| || || ||||||| Sbjct 1364074 CGGCAAGGCCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 1364133 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||| || || |||| |||||||| || || ||||| Sbjct 1364134 AGATGCCTTCAATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 1364176 >seq319 Length=32890058 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 31273201 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 31273142 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| || ||| |||||| || |||| ||| || || Sbjct 31273141 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 31273088 >seq38 Length=438151 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | |||||||| | | |||| | Sbjct 287577 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACCCCCACCGAGTTC 287518 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || || || || ||||||||| |||||||||||||||| ||||||||| Sbjct 287517 TTCTTCCACGCCATGGGTGGCCGAGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 287458 Query 509156 ACGGG 509160 || || Sbjct 287457 ACCGG 287453 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 281087 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 281028 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || | ||| || ||||| |||| || |||||| |||||||| Sbjct 281027 CATGACCTCGAGGGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 280976 >seq424 Length=332418 Score = 93.3 bits (102), Expect = 5e-13 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 ||| |||||| || ||| ||| | ||||||| |||| | ||| | |||||| || || Sbjct 223662 GCCGGGCCAGCTCCCCGGGCAGCAGCAGGCGCGCGGCCGCCTGCACCTCGCGGCTGGTGA 223721 Query 1254403 TCGTGTTGCGCTTGTTCG-AGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 ||| || | | || | |||||||| || | ||||| | | | || || | | Sbjct 223722 GGGTGGCACGGT-GCCCGTACTGCGCCAGGCGCGCCGCCTCCGCCGCCAGCCGCTCCAGC 223780 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||| |||||||||||||||| ||| | |||| ||||||| | | ||||||| Sbjct 223781 ATGTCGTTCACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGGCGAGGTCGGGG 223840 Query 1254522 TGCACCTG 1254529 |||||||| Sbjct 223841 TGCACCTG 223848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106721080440115