Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq290 118 1e-21 seq81 98.7 9e-16 seq408 93.3 4e-14 >seq290 Length=3199669 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2644374 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 2644433 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || | || ||||| || Sbjct 2644434 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCTTTCCCCCCGACCAG 2644493 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||||||||| | | | | |||| ||||| ||| Sbjct 2644494 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTACAAC 2644553 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| ||||| |||| || | || ||| Sbjct 2644554 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 2644601 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || ||||| Sbjct 2645511 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGAC-ATCACTCTGGAGGTGTGAGCCAGT 2645569 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 2645570 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 2645629 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGA--TTATA 24881 || | |||||||||| || || |||||||||||| | | | |||| || | | | Sbjct 2645630 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTTAACA 2645689 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||| || |||||||| || || ||| ||||| |||| Sbjct 2645690 ACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 2645726 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 2644831 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 2644890 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||| || || Sbjct 2644891 GACAC-CTCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCCTGACCAG 2644949 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | | |||| || || ||| Sbjct 2644950 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTA-AAC 2645008 Query 24884 ATTCAAAAGGAATCGACACT 24903 || || |||||||| || || Sbjct 2645009 ATCCAGAAGGAATCCACCCT 2645028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || |||| ||| || ||| Sbjct 2645283 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGGAGTTGAGCCCAGT 2645342 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || ||| || | Sbjct 2645343 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATCCCTTCCTGACCG 2645402 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGG-ATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||||| || | | | | | || || || || Sbjct 2645403 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGAATGGGCGCACCCTCTCTGACTACAA 2645462 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || ||| ||||| |||| Sbjct 2645463 CATCCAGAAAGAGTC-ACTCTGCACCTGGTGCTGCG 2645497 >seq81 Length=318634 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 24706 GCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGA 24765 |||||||| || || || || || || ||||| || | ||| | || ||| | | || Sbjct 153447 GCAGATCTCCATGAAYACCCTCACGGGGAAAACCATCAACCTCAAGGTTGAACCTTCTGA 153388 Query 24766 CACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACA 24825 || ||||| ||| || ||||||||| || || || || || ||||| ||||| || Sbjct 153387 TACTACAGAAAATGTAGAAGCAAAGATCCAGGATAAGGAGGGTATCCCTCCAGATCAGCA 153328 Query 24826 ACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAACA 24884 | ||||| |||| ||||| ||||||||||| | || | ||| |||| | | |||| Sbjct 153327 GCAGCTGATCWTTGCTGGGAAGCAGCTGGAGGA-TGGACACACACTGTCCAACTGCAACA 153269 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 | || ||||||| || || ||| ||| | || || Sbjct 153268 TCTAACAGGAATCCACCCTTCACCTGGGGCTGGGA 153234 >seq408 Length=880842 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || || || || ||| Sbjct 118547 ATGCAGATKTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 118488 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| ||||| || ||||| || || Sbjct 118487 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 118428 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAA 24882 || | ||||||||| | |||| || ||||| ||| | | | | || || || || Sbjct 118427 CAGAGGCTGATCTTTG-CAGGAAGCA-CTGGAAGATGGCCGTACCCTCTTCTGACTACAA 118370 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 ||| || |||||||| || || ||| ||||| |||| |||| Sbjct 118369 CATCCAGAAGGAATCTACCCTGCACCTGGTGCTGCGCCTGCG 118328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868947146600