Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq290 136 3e-27 seq408 113 3e-20 >seq290 Length=3199669 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| |||||||| | |||| |||||||| ||||| || || || Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || || |||||||| | |||||||| | || Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || || ||| | || | ||| ||| ||| || Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2644373 Score = 120 bits (132), Expect = 2e-22 Identities = 170/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 2645509 CCACCCCTGAGGCGCAGCACCAGGTGCAGAGTGA-CTCTTTCTGGATGTTGTAGTCAGAG 2645451 Query 34811 AGGCTGCGCTCAT-CGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC-G 34868 ||| ||||| ||| | ||||| ||||| || ||||||||||| | ||| |||| | | Sbjct 2645450 AGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGC-GGTCAGGAAG 2645392 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||| |||||||| | || || |||||| || || || | ||| ||| ||| Sbjct 2645391 GGATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTC 2645334 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | | || |||||||| || || |||||||| ||||||||||||||| Sbjct 2645333 AACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645282 Score = 118 bits (130), Expect = 7e-22 Identities = 169/232 (73%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGG-TGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 || ||||| | | ||| |||||| || | || ||| ||||| ||||| ||||| || Sbjct 2644829 CCACCCCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGA 2644770 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| ||||| | || ||||| ||||| || |||||||||| | |||||||| | || Sbjct 2644769 GAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGG 2644710 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCG 34927 | ||||||||||| | || || |||||| || || || | ||| ||| ||| Sbjct 2644709 AATGCCCTCCTTGTCCTGGATCTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCC 2644652 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATC-TGCATG 34978 || || | ||| || ||||| || || |||||||| ||||||||| |||||| Sbjct 2644651 ACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCATG 2644601 Score = 114 bits (126), Expect = 8e-21 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || |||| |||||||| ||||| ||||| || ||| ||||| | || Sbjct 2645040 AGCACCAGTGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCT 2644982 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | ||| |||||||| Sbjct 2644981 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCC 2644922 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT-TCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || || || | | ||| ||| ||| || || | || ||||| Sbjct 2644921 TGGATCTTGGCCTTCAC--ATTCTCGAGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 2644864 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| ||||||||||||||| Sbjct 2644863 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2644830 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTAT--AGTCCG 34808 || ||||| | | ||| |||||||| | |||| |||||||| ||||| | |||| | Sbjct 2645738 CCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAG 2645679 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | | Sbjct 2645678 ACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2645619 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || || || ||| | || | ||| |||| | Sbjct 2645618 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACA 2645559 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || || ||||| || || |||||||| ||||||||||||||| Sbjct 2645558 CCTCCAGAGTGAT-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2645510 >seq408 Length=880842 Score = 113 bits (124), Expect = 3e-20 Identities = 147/195 (75%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 34787 TCCTTCTG-AATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||||| |||||| ||||| || ||| | || |||| ||||| ||||| || ||||| Sbjct 117908 TCCTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAA 117967 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| | | |||||| | || | || |||||||| | || || ||||| | Sbjct 117968 GATCAG-CCTCTCTGGTCAGGAGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 118023 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT-CCCGTGAGGGTCTT 34962 | || || | ||| ||| |||||| |||| ||| ||||||||| || || |||||||| Sbjct 118024 TTCTCAATGGTGTCACTGGGCTCGACCTCAA-GGTGATGGTCTTTGCCAGTCAGGGTCTT 118082 Query 34963 TACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 118083 GACAAAGATCTGCAT 118097 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/195 (74%), Gaps = 12/195 (6%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || ||| | || |||| |||||| |||| || | ||| Sbjct 118134 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGT-GCTTGCCTG--AAG 118190 Query 34847 ATCAGTCGT-TGCTGGTCTTGCGGC-ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGG 34904 ||||| | |||||||| | || | ||||||||||| | || || | ||||| Sbjct 118191 ATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCTCCTTGTCTTGGATCTTG-GCTTGAC-- 118247 Query 34905 ATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 || || || | ||| |||| ||||| ||| ||| |||||||| || || |||||||| Sbjct 118248 ATTCTCAATGGTGTCACTGGC-TCGACTCCAA-GGTGATGGTCTTGCCAGTCAGGGTCTT 118305 Query 34963 TACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 118306 GACAAAGATCTGCAT 118320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325672576003805