Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq290 113 3e-20 seq408 96.9 3e-15 >seq290 Length=3199669 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||||||| || || |||||||| || || ||||| ||||| | Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | |||| || ||||| || || ||| Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | ||||||||||| || | || || || | || | |||||| | || || Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || |||||||| | ||| || ||||| |||||||| || Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2644371 Score = 109 bits (120), Expect = 4e-19 Identities = 163/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 29563 CCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATG 29622 || |||| ||||||||||| || || |||||||| || || ||||| || || | | | Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 |||||| ||| || || || || || ||| | |||| || ||||| || || ||||| Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 29683 CCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCA 29742 ||||| ||||| || | || || ||| | || | |||||| |||| ||||| Sbjct 2645159 CCCTC-TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCA-CTGGTTCGACTTCC 2645102 Query 29743 AGAGTTATAG-TTTTGCCAGTTAAGGTTTTAACAAA-TATCTGCAT 29786 || || || | |||||||||| | ||| || ||||| |||||||| Sbjct 2645101 AGGGTGATGGTTTTTGCCAGTCAGGGTCTTCACAAAGAATCTGCAT 2645056 >seq408 Length=880842 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 29564 CCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA-ATG 29622 ||| || |||||||||| || || || ||||| || || ||||| || || | | | | Sbjct 118326 CCCGCAGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGG 118385 Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 || || ||| || ||| || || ||| | |||| || ||||| || || || || Sbjct 118386 GTACGGCCATCTTCCAGTGCTT--CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATG 118443 Query 29683 CCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCA 29742 || || |||||||| | || ||||||| | || | |||||| | || || ||| Sbjct 118444 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCA 118503 Query 29743 AGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || |||||||| | ||| || || || ||||||||||| Sbjct 118504 AGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTT 118550 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/229 (72%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||| || || || ||||||||||| || ||||| || || | Sbjct 118099 CCACCCCTGAGGCGCAGCAC-AAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 118157 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCA-ATCTTTGCTGATCCGGCGG 29678 | ||| || ||| || || || ||||| | | |||| || ||||| || || || Sbjct 118158 AGGGTACGGCCATCTTCCAG-TGCTTGCCTG--AAGATCAGCGCTCTGCTGGTCAGGAGG 118214 Query 29679 A-ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | || ||||| |||||||| || || | |||||| | || | |||||| | || | Sbjct 118215 AGATGCCCTCCTTGTCTTG-GATCTTGGCTTGACATTCTCAATGGTGTCA-CTGGCTCGA 118272 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||| || || || |||||||| | ||| || ||||| |||||||| Sbjct 118273 CTCCAAG-GTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385195279693395