Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq319 105 6e-18 >seq319 Length=32890058 Score = 105 bits (116), Expect = 6e-18 Identities = 130/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAAC-TGCC 21183 || |||||||| || | || |||||||||||| | |||||| || ||| | ||| |||| Sbjct 31564250 AGYATTTGGGGACCAACGTGTGATGGCTTAGATCGGATTGTTGAGAGGT-TCAACATGCC 31564192 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 ||||| |||||||| |||||| || | |||||||||||||| || || | || ||| Sbjct 31564191 TGAGCTGCAAGTGGGTGACTGGATCCTGTTTGAAAACATGGGTGCCTATA-CTGTTGCAG 31564133 Query 21244 C-TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | |||| || || || || |||| | |||| || |||||||| || ||| Sbjct 31564132 CAGCTTCTACTTTCAATGGATTCCAGAGGCCAACAATACACTATGTGATGTCA 31564080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463516077939600