Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq290 136 8e-27 seq408 125 1e-23 seq319 105 1e-17 seq81 87.8 4e-12 >seq290 Length=3199669 Score = 136 bits (150), Expect = 8e-27 Identities = 156/206 (76%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 82606 AGTGCA-GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 |||||| | || ||||| ||||| || || || ||||| || | | |||||||| || Sbjct 2645034 AGTGCAAGGGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGC 2644976 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || ||||||||||| || || || || || ||||| || |||||||| || || ||| Sbjct 2644975 TGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATC 2644916 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || ||||| || | || ||| | || || || |||| ||| || |||||||| Sbjct 2644915 TTGGCCTTCACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCA 2644857 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| ||||| |||||||| Sbjct 2644856 GTCAGGGTCTTCACAAAGATCTGCAT 2644831 Score = 120 bits (132), Expect = 6e-22 Identities = 158/217 (73%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAA--TCAGATAGAATTCTAC 82653 ||||| || | |||||| || ||||| ||||| || || | | ||||| || | | || Sbjct 2645726 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGAC 2645667 Query 82654 CGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCT 82713 | || || || || || ||||||||||| || || || || || || || || || |||| Sbjct 2645666 CATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCT 2645607 Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 | || || ||||| || || || || || || || ||| | | | || |||| ||| | Sbjct 2645606 TGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGA 2645547 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||| ||||| ||||| |||||||| Sbjct 2645546 T-GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2645511 >seq408 Length=880842 Score = 125 bits (138), Expect = 1e-23 Identities = 164/217 (76%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || ||||||||||| ||||||||||| || || || ||||| || | | || Sbjct 118111 CGCAGCAC-AAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 118169 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAG-TCTTTGTTGATCTGGAGG-TATTCCTTCCT 82713 ||||| || || || || | ||||| || || || || || ||||| || || |||| Sbjct 118170 TCTTCCAG-TGCTTGCCTG--AAGATCAGCGCTCTGCTGGTCAGGAGGAGATGCCCTCCT 118226 Query 82714 TATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 | ||||| ||||| || || ||||| ||||| || ||| | || || || ||||| || | Sbjct 118227 TGTCTTGGATCTTGGC-TTGACATTCTCAATGGTGTCACT-GGCTCGAC-TCCAAGGTGA 118283 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| |||| ||||| ||||| |||||||| Sbjct 118284 TGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118320 >seq319 Length=32890058 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 17690331 AGCTTTTTTCGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGG 17690272 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 |||| || ||||| |||| ||| | || || | |||||||| || ||| | || || Sbjct 17690271 ATTGGCAGCTTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATATTTGACCAT 17690212 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 17690211 ATTGCAATTGGTA 17690199 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 17689694 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 17689635 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| |||| || || || || |||||||||||| Sbjct 17689634 AAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGGTAAC 17689575 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 17689574 TTCTACTATCGGACATATAAG 17689554 >seq81 Length=318634 Score = 87.8 bits (96), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || || ||||||| ||| || || ||||||||||| || || ||| Sbjct 153292 CCATCCTCCAGCTGCTTCCCAGCAAWGATCAGCTGCTGCTGATCTGGAGGGATACCCTCC 153351 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| || |||||||||| ||||||||| | |||||| |||||| || Sbjct 153352 TTATCCTGGATCTTTGCTTCTACATTTTCTGTAGTATCAGAAGGTTCAAC 153401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981763106627205