Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05]
5,095 sequences; 1,067,760,248 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq319 98.7 2e-15
>seq319
Length=32890058
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600
|| |||||||| |||||| ||||| | ||||| ||||| |||||||| | ||||||||
Sbjct 17690330 GCTTTTTTCGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGA 17690271
Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660
|||| || ||||| | || ||| | || || | |||||||| || || | || |||
Sbjct 17690270 TTGGCAGCTTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATATTTGACCATA 17690211
Query 58661 ATGCAATTGGTA 58672
|||||||||||
Sbjct 17690210 TTGCAATTGGTA 17690199
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728
||| || |||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 17689698 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 17689639
Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788
|| ||||||| ||| ||| || || ||||| |||| || || || || |||||||
Sbjct 17689638 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 17689579
Query 58789 TAACTTCTATTTTAGAACATACAAG 58813
||||||||| | | | ||||| |||
Sbjct 17689578 TAACTTCTACTATCGGACATATAAG 17689554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903353663999200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |