Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq290 134 1e-26 seq408 113 4e-20 seq1 91.5 1e-13 >seq290 Length=3199669 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || |||||||| || ||| | |||||| ||||||||||| Sbjct 2644571 GGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCC 2644512 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| || | ||| || ||||| |||||| ||| Sbjct 2644511 TGCAAAGATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTCCTGGATCTTGGCCTT 2644452 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 2644451 CACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 2644392 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2644391 CTTCACAAAGATCTGCATG 2644373 Score = 114 bits (126), Expect = 1e-20 Identities = 146/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 133467 GACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGC 133525 ||||||||||| || ||||| || | ||| | | | ||||| ||||||||||| || Sbjct 2645477 GACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATTCCTCCAGCTGCTTGCCAGC 2645418 Query 133526 GTAAATGAGCCGCTGCTGGTCGGGA-GGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGA 133584 | | || |||| |||| |||| ||| ||||| ||||||||||| |||||| |||| Sbjct 2645417 GAAGATCAGCCTCTGC-GGTCAGGAAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTGA 2645359 Query 133585 GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTT 133644 | ||| | ||||| ||||||| || ||| |||| ||| ||||| ||||| || | Sbjct 2645358 CATTCTCGATGGTGTCACTGGGCTCAACTCCGAGAGTGATGGTCTTGCCAGTCAGGGTCT 2645299 Query 133645 TTACGAAAATCTGCATG 133661 | || || ||||||||| Sbjct 2645298 TCACAAAGATCTGCATG 2645282 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || || || || || ||| | ||| || ||||||||||| Sbjct 2645026 GGTGGATTCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 2644968 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||| || ||||||||||| |||||| ||| Sbjct 2644967 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTT 2644908 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| |||||||||| || | |||| ||| ||||| ||||| || Sbjct 2644907 CACATTCTCGA-GGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGT 2644849 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 2644848 CTTCACAAAGATCTGCATG 2644830 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || | ||| | ||| || ||||||||||| Sbjct 2644798 GTTGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 2644739 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || ||||||||| || || ||||| |||||||| |||||| ||| Sbjct 2644738 GCGAAGATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTG 2644679 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| || || || ||||| || Sbjct 2644678 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGA-TGTCTTACCAGTCAGGGTC 2644620 Query 133644 TTTACGAAAATC-TGCATG 133661 || || || ||| |||||| Sbjct 2644619 TTCACAAAGATCTTGCATG 2644601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/203 (73%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAA--TCGCCCATCGTG-GACGAGTCCTCGAGCTGCTT 133519 |||||| || ||||| || |||| | || || ||| ||| | ||||| |||||||| Sbjct 2645709 GGTGGATTCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCA-TCCTCCAGCTGCTT 2645651 Query 133520 GCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 ||| || | || |||| |||||||||||| || ||||| |||||||| |||||| Sbjct 2645650 GCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGC 2645591 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTC-CACGTCGACGGTGACGGTTTTGCCGGTCA 133638 ||| | | ||| | ||||| | ||||| ||| || | |||| || ||||| |||| Sbjct 2645590 CTTCACGTTCTCGATGGTGTCACT-GGCTCACACCTCCAGAGTGA-TGTCTTGCCAGTCA 2645533 Query 133639 GAGTTTTTACGAAAATCTGCATG 133661 | || || || || ||||||||| Sbjct 2645532 GGGTCTTCACAAAGATCTGCATG 2645510 >seq408 Length=880842 Score = 113 bits (124), Expect = 4e-20 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || |||| ||||||||| |||||||||||||||||||| |||| Sbjct 118403 TGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 118461 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| Sbjct 118462 TTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCA 118521 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 118522 GTCAGGGTCTTGACGAAMATCTGCAT 118547 Score = 109 bits (120), Expect = 5e-19 Identities = 121/156 (78%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| ||| | || |||| || |||||| ||||| |||||||||||| Sbjct 117945 TCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCT-CTGGTCAGGAGG-ATGCCTTCCTTG 118002 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||||| ||||| ||||||| || || | ||||| | Sbjct 118003 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTC-AAGGTGATG 118061 Query 133626 GT-TTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||| ||||| || || || || |||||||| Sbjct 118062 GTCTTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 118097 >seq1 Length=1900206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||| ||| | | ||| || || ||| || ||||| || ||||| ||||| || || Sbjct 1358813 GCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 1358872 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 |||||||| || |||||| || ||| |||||| ||| ||| |||| ||| | Sbjct 1358873 CCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGAGCTGAGCCTGGGCGCTCTCGAA 1358932 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | | || | | | || ||||| || |||||||| ||||| | ||| |||||||| Sbjct 1358933 GGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCAATGCCGATGGGCCG 1358992 Query 148679 GTG 148681 ||| Sbjct 1358993 GTG 1358995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483390012137800