Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1371 118 3e-23 seq408 98.7 3e-17 seq59 98.7 3e-17 >seq1371 Length=170129 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 53334 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 53275 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 53274 CCCGGGCTTCAGC 53262 Score = 114 bits (126), Expect = 4e-22 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||| | Sbjct 54749 GCTGAAGTAGCTCAGCTGGGAGRGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 54690 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 54689 CCGGGCTTCAGC 54678 Score = 87.8 bits (96), Expect = 6e-14 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| |||| || |||||||||||||||||| ||||||||||||| | Sbjct 40462 GCTGAAGTAGCTCAGCTGGGGAAGGCTTAGACTGAAGATCTAAA-GTCCCTGGTTCAATC 40520 Query 2829 CCGGGCTTCAGC 2840 || ||||||||| Sbjct 40521 CC-GGCTTCAGC 40531 Score = 86.0 bits (94), Expect = 2e-13 Identities = 66/73 (90%), Gaps = 4/73 (5%) Strand=Plus/Plus Query 2769 GCTGAAGT-AGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||| ||||||| ||||||| | |||||||||||||||||| ||||||||||||| Sbjct 35192 GCTGAAGTGAGCTCAGCTGGGAGA-CGTTAGACTGAAGATCTAAA-GTCCCTGGTTCAAT 35249 Query 2828 CCCGGGCTTCAGC 2840 ||| ||||||||| Sbjct 35250 CCC-GGCTTCAGC 35261 >seq408 Length=880842 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 121744 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 121685 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 121684 CCGGGTTTCGGC 121673 >seq59 Length=1261948 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 475186 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 475127 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 475126 CCGGGTTTCGGC 475115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848716756275