Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq724 197 2e-44 seq399 185 1e-40 seq1 125 1e-22 seq424 113 6e-19 seq319 98.7 1e-14 seq38 87.8 3e-11 >seq724 Length=4338181 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 871385 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 871332 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||||||| ||| Sbjct 871331 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 871272 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 871271 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 871212 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 871211 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 871163 Score = 194 bits (214), Expect = 2e-43 Identities = 182/231 (79%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || ||| ||| |||| ||||| Sbjct 886098 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATTCTCGTCCAAGGCCATG 886044 Query 724974 TCGATCATGAACTCGTTTGTCAACGA--CATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||||||||||| || |||||||| ||| |||| ||||||| ||||||| | Sbjct 886043 GGCATCATGAACTCCTTCGTCAACGAAGCATCTTCGAGCGCATCGCGGGCGAGGCCTCGC 885984 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||| Sbjct 885983 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 885924 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 885923 GCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 885873 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 875120 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 875173 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || ||||||||||| |||| ||||||| ||||||| ||| Sbjct 875174 AGTATCATGAATTCTTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 875233 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 875234 CTGGCYCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 875293 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 875294 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 875342 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 909496 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 909549 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| ||||||| ||| Sbjct 909550 GGCATCATGAACTCCTTCGTTAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCGCGC 909609 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 909610 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 909669 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| |||||| || ||||||||||||| Sbjct 909670 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCRGTGTCCGAGGGCACCA 909718 Score = 136 bits (150), Expect = 6e-26 Identities = 178/236 (75%), Gaps = 14/236 (6%) Strand=Plus/Plus Query 724914 TACAA-GGTG-CTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||| |||| || ||||||||||||||| || || |||| |||| ||| Sbjct 974696 TACAATGGTGGCTGAAGCAGGTGCACCCCGACAC-----GGGCATCTCGTCGCAAG-CCA 974749 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGAC-CGCATCGGCACCGAGGCCGGT 725030 || || |||||||| || ||||||||||| |||| |||| || ||||||| | Sbjct 974750 TGGGCATAATGAACTCCTTCGTCAACGACATCTTCGAGGCGCAATCGCGGCGAGGCCCCT 974809 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACA-CGATCGGCA-CGCGCGAGATCCAGACCGC 725086 ||| ||||||| || ||||| |||| || | ||| | |||| ||||||||||| || Sbjct 974810 CGCGCCTGGCGCACTACAACA-GCGCTCCAACCATCAACCTCGCGGGAGATCCAGACGGC 974868 Query 725087 CGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 974869 CGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 974924 Score = 132 bits (146), Expect = 7e-25 Identities = 178/230 (77%), Gaps = 22/230 (10%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||| |||| ||||||||||||| | ||| || |||| | |||| ||||| Sbjct 988179 TACAAG-TGCTGAAGCAGGTGCACCGC--AAC-----GGGCATCTGTC--CAAGGCCATG 988130 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 | ||||||||||| || ||||||||||| |||| |||||| || ||||||| |||| Sbjct 988129 GC-ATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATC-GCGGCGAGGCC--TCGC 988074 Query 725034 -CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||||||| || ||| |||||| ||| ||| | |||| |||||||||| ||||||||| Sbjct 988073 GCTGGCGCACTACAA-AAGCGCTCCAC-ATC-ACTCGCGGGAGATCCAGA-CGCCGTGCG 988018 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| |||| || ||| || || ||||||||||||| Sbjct 988017 -CTGCTGCTGCCCGGCGAGCTGG-CAAGCAAGCTGT-TCCGAGGGCACCA 987971 Score = 127 bits (140), Expect = 3e-23 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 725021 CGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCA 725080 || |||| |||||||||| || |||||||||| ||| ||| | |||| |||||||| Sbjct 1020712 CGNGGCCTCGCGCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCA 1020653 Query 725081 GACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| |||||||||||| | ||| |||||| ||||||| ||||||||| ||||||||||| Sbjct 1020652 GACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 1020593 Query 725141 CA 725142 || Sbjct 1020592 CA 1020591 Score = 122 bits (134), Expect = 1e-21 Identities = 175/233 (75%), Gaps = 19/233 (8%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||| ||||||||||||||| || || |||| | |||| ||||| Sbjct 983351 TACAAGGTGCG-AAGCAGGTGCACCCCGACAC-----GGGCATCTTGTC-CAAGGCCATG 983403 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| ||||||| |||| Sbjct 983404 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCC--TCGC 983461 Query 725034 -CTGGCGCGCT-CCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| || | ||||||||| ||| ||| | |||| ||||||||||| ||| || Sbjct 983462 GCTGGCGCACTACAAACAAGCGCTCCAC-ATC-ACTCGCGGGAGATCCAGACGGCC--GC 983517 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCA--GGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | ||| |||||| ||||||| | |||| | ||||||||||||| Sbjct 983518 GCC-GCTGCTGC-CGGCGAGCTGGCCAACGCAACGCGGGGTCCGAGGGCACCA 983568 Score = 95.1 bits (104), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 725068 CGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCG 725127 |||| ||||||||||| |||||||||||| | ||| |||||| ||||||| |||||||| Sbjct 996521 CGCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCG 996462 Query 725128 TCTCCGAGGGCACCA 725142 | ||||||||||||| Sbjct 996461 TGTCCGAGGGCACCA 996447 >seq399 Length=34323315 Score = 185 bits (204), Expect = 1e-40 Identities = 180/231 (78%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || || |||| ||| |||| ||| Sbjct 29941840 TCTACAAGGTGCTGAAGCAGGTGCACCCTGACAC-----GGGCATC-TCCTCCAAGGCCA 29941893 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || |||||||| | || ||||| | | |||||| | Sbjct 29941894 TGGGCATCATGAACTCCTTCGTGAACGACATCTTTGAGCGCATTGCCGGGGAGGCCTCGC 29941953 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||| Sbjct 29941954 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 29942013 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 29942014 GCCTGCTGCTGCCCGGSGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 29942064 >seq1 Length=1900206 Score = 125 bits (138), Expect = 1e-22 Identities = 112/138 (81%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | |||||| ||||| ||||||||| ||||| Sbjct 1361725 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACTGGCACCCCCTACATGCTCTAC 1361666 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 1361665 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 1361607 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 1361606 CCTGTGCACCGAGATCGT 1361589 Score = 93.3 bits (102), Expect = 6e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 262947 CATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGAGGTCATCAC 263006 ||||||||||||| | || | |||||||||||||||| |||| | ||||| | ||| Sbjct 1356916 CATGCCCACGGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACAC 1356857 Query 263007 GAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 |||||||||||||||||| | || |||||||| || || Sbjct 1356856 CAGCAACATCTACACGCGCAGGGTCCTCTCGGGGGAGTT 1356818 >seq424 Length=332418 Score = 113 bits (124), Expect = 6e-19 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 724929 CAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCG 724988 |||||||||||| ||| |||||| ||| |||| ||||| |||||||||||| Sbjct 223848 CAGGTGCACCCCG--ACCTC---GCCATC-TCCTCCAAGGCCATGAGCATCATGAACTCG 223795 Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 ||||| ||||||||| | || || | | | ||||| | |||||||||| | | Sbjct 223794 TTTGTGAACGACATGCTGGAGCGGCTGGCGGCGGAGGCGGCGCGCCTGGCGCAGTACGGG 223735 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 | || ||| || || |||||| | ||| | |||| ||||||| | ||| ||| Sbjct 223734 CACCGTGCCACCCTCACCAGCCGCGAGGTGCAGGCGGCCGCGCGCCTGCTGCTGCCCGGG 223675 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || |||||| |||||||||| ||||||||||||| Sbjct 223674 GAGCTGGCCCGGCACGCCGTGTCCGAGGGCACCA 223641 >seq319 Length=32890058 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||| || ||| | |||||||||| ||||| Sbjct 31273088 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 31273147 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 31273148 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 31273200 >seq38 Length=438151 Score = 87.8 bits (96), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 |||| || |||||||||||||||| |||||||| ||||| || || ||| || || | Sbjct 287460 CGGCCGTTTTGACGGCCGTGTCGATGAGGCCCTCTCGGCCACCCATGGCGTGGAAGAAGA 287519 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 |||| | | |||||||| | ||| ||||| ||| ||||||||||||||||| Sbjct 287520 ACTCGGTGGGGGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGG 287577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177319777885390