Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq290 132 4e-26 seq408 87.8 2e-12 >seq290 Length=3199669 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| | || ||| ||| |||| ||||||||||| || ||||| Sbjct 2644564 TCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAG 2644505 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||| |||||| |||||| ||||| | Sbjct 2644504 ATCAGCCTCTGCTGGTCGGGGGGAAAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTC 2644445 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || || |||| || |||||| Sbjct 2644444 TCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 2644385 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2644384 AAGATCTGCAT 2644374 Score = 125 bits (138), Expect = 6e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| || || | || ||| ||| |||| ||||||||||| || ||||| Sbjct 2645019 TCCTTCTGGATGTT-TAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 2644961 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | ||||| | ||||||||| |||||| ||||| | || Sbjct 2644960 ATCAGCCTCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTCACA-TT 2644902 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | ||||| || | |||||||||| ||||| || || || |||| || |||||| Sbjct 2644901 CTCGAGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 2644842 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2644841 AAGATCTGCAT 2644831 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| ||| |||| ||||||||||| || || || Sbjct 2644793 CTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 2644734 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | |||| || |||||||||| |||||| || | | | Sbjct 2644733 GATCAACCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATT 2644674 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || ||||| |||| || ||||| Sbjct 2644673 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCAC 2644615 Query 35725 AAATATC-TGCAT 35736 ||| ||| ||||| Sbjct 2644614 AAAGATCTTGCAT 2644602 Score = 113 bits (124), Expect = 4e-20 Identities = 144/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 2645246 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTCCCTGCAAAG 2645187 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || || ||||||| |||||| ||||| | | Sbjct 2645186 ATCAGCCTCTGCTGGTCTGGGGGAATGCCCT-CTTGTCCTGGATCTTGGCCTTCACATTC 2645128 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG-TTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| || |||| ||||| | |||| || |||| || ||||| Sbjct 2645127 TCAATGGTGTCACT-GGTTCGACTTCCAGGGTGATGGTTTTTGCCAGTCAGGGTCTTCAC 2645069 Query 35725 AAA-TATCTGCAT 35736 ||| |||||||| Sbjct 2645068 AAAGAATCTGCAT 2645056 Score = 113 bits (124), Expect = 4e-20 Identities = 142/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAA--TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 ||||| || ||||||| | || | || ||| || | || ||||||||||| || |||| Sbjct 2645702 TCCTTCTGGATGTTGTTAAGTCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAA 2645643 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | |||| || ||||||||| | |||| || |||||||||| |||||| ||||| Sbjct 2645642 AGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 2645583 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | | |||||||| ||||| || || || |||| || |||| Sbjct 2645582 TCTCGATGGTGTCACTGGCTCACACCTCCAGAGTGAT-GTCTTGCCAGTCAGGGTCTTCA 2645524 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 2645523 CAAAGATCTGCAT 2645511 >seq408 Length=880842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 35546 TCCTTTTG-AATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||| || ||||||||| || | || ||| || | || ||||||||||| || || || Sbjct 117908 TCCTTCTGGAATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCGAA 117967 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || || |||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 117968 GATCAGCCTCT-CTGGTCAGGAGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 118025 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT-TTTACCCGTCAAAGTTTTCA 35723 | | ||||| || | || |||| || ||||| || ||| || |||| || || | Sbjct 118026 CTCAATGGTGTCACTGGGCTCGACCT-CAAGGTGATGGTCTTTGCCAGTCAGGGTCTTGA 118084 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 118085 CAAAGATCTGCAT 118097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450764890082600