Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporophila_20hypoxantha_20[genbank_20GCA_5F002167245.1_202017-06-05] 5,095 sequences; 1,067,760,248 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq290 105 7e-18 seq408 89.7 5e-13 >seq290 Length=3199669 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || ||||||||||| || |||||||| || Sbjct 2644600 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGAC 2644541 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||||||||| |||| | |||||| ||||| || Sbjct 2644540 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2644481 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 | ||| ||||| || || || || || || || | ||||| | ||||| Sbjct 2644480 AAGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 2644421 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || || || || ||||| ||| Sbjct 2644420 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2644370 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACG 134549 ||||| || |||| ||| ||||| || ||||||||||| || |||||||||||| | | Sbjct 2645279 CCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGG 2645220 Query 134550 GTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATG 134609 ||| || || || ||||| || |||||||| |||| | |||||| || || || ||| Sbjct 2645219 GTGCGACCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATG 2645160 Query 134610 CCTTCTTTTTCTTGA 134624 || |||| | || || Sbjct 2645159 CCCTCTTGTCCTGGA 2645145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGT--AGTCGC 134544 || || ||||| |||| ||| ||||| || ||||||||||| || ||||||| |||| Sbjct 2645738 CCCCCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTTAAGTCAG 2645679 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| || || || ||||| ||||| ||||| |||| | |||||| ||||| | Sbjct 2645678 ACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2645619 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | ||||| || || || || || || Sbjct 2645618 GAATGCCCTCCTTGTCCTGGATCTT 2645594 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGG-TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 || || ||||| |||| ||| ||| || || || || || || || ||||||||||| Sbjct 2644829 CCACCCCTGAGGCGCAGCACCAGGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGA 2644770 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | ||| || ||||| ||||| || || ||||| | |||||| || || || Sbjct 2644769 GAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGGGG 2644710 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || |||||| || | ||||| | ||||| Sbjct 2644709 AATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 2644650 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAAT-TTGCAT 134713 || || || || || ||||| || | || || || || || |||||| Sbjct 2644649 CTCCAGGGTGAT-GTCTTACCAGTCAGGGTCTTCACAAAGATCTTGCAT 2644602 >seq408 Length=880842 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| ||||| || || |||||||| || ||||||||||| | | ||| | Sbjct 118331 AGGCGCAGCACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAAGAGGGTACG 118390 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || || |||||||| |||| | |||||| || || || |||||||| Sbjct 118391 GCCATCTTCCAG-TGCTT-CCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC 118448 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || || |||||| || | ||||| | || || || || || Sbjct 118449 CTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 118508 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || | || || ||||| || |||||||| Sbjct 118509 GATGGTCTTGCCAGTCAGGGTCTTGACGAAMATCTGCATTTT 118550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505366212439400